Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HUB94_RS10040 Genome accession   NZ_CP054612
Coordinates   1798373..1800142 (+) Length   589 a.a.
NCBI ID   WP_110045205.1    Uniprot ID   A0A2V2YRC2
Organism   Paenibacillus cellulosilyticus strain KACC 14175     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793373..1805142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUB94_RS10015 (HUB94_10045) - 1793781..1794677 (+) 897 WP_110045201.1 hypothetical protein -
  HUB94_RS10020 (HUB94_10050) - 1794981..1796462 (+) 1482 WP_110045202.1 Lsa family ABC-F type ribosomal protection protein -
  HUB94_RS10025 (HUB94_10055) - 1796637..1797191 (+) 555 WP_174812582.1 MarR family transcriptional regulator -
  HUB94_RS10030 (HUB94_10060) - 1797306..1797488 (+) 183 WP_281272021.1 DUF2798 domain-containing protein -
  HUB94_RS10035 (HUB94_10065) - 1797876..1798286 (+) 411 WP_110045204.1 MarR family transcriptional regulator -
  HUB94_RS10040 (HUB94_10070) rcrP 1798373..1800142 (+) 1770 WP_110045205.1 ABC transporter ATP-binding protein Regulator
  HUB94_RS10045 (HUB94_10075) rcrQ 1800171..1801979 (+) 1809 WP_245946774.1 ABC transporter ATP-binding protein Regulator
  HUB94_RS10050 (HUB94_10080) - 1802195..1802743 (+) 549 WP_110045207.1 OsmC family protein -
  HUB94_RS10055 (HUB94_10085) - 1802787..1804112 (+) 1326 WP_110045208.1 LLM class flavin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65252.82 Da        Isoelectric Point: 5.5972

>NTDB_id=453802 HUB94_RS10040 WP_110045205.1 1798373..1800142(+) (rcrP) [Paenibacillus cellulosilyticus strain KACC 14175]
MLKIFKYLTQKDWLLILVSVVFIVAQVFLDLRLPDYMADITMLIQAEGTTMSDLVVPGSYMLLCAVGSMVAAVIVGYFAA
RIAASLAKRLRGLVFEQTLSFSMAEMNRFSTSSLITRSTNDITQIQLIVAMGMQVIVKAPILAVWAIIKIANKNLEWTTA
TGLAILVLCIMLAVIIIFAIPKFKIIQTLTDNLNRVTRENLTGIRVVRAYNAEHYQQQKFEQANLDLTKTNLFANRMMAL
MGPGMTLIMSGLSVSIYWIGAYLINNTGQMDRLPLFANMVVFSSYAMQVVMAFMMVSMIFIMLPRAAVSAKRILEVLNMS
VSITDGKVSEGHPGSIGEVEFRNVSFTYPDSDEPILQNISFKARRGEVVAFIGATGSGKSSVMNLIPRFYDATEGEVLVD
GVNVREYAQEALHEKIGYVSQSAVIFRGTVASNVAYGNANQTEQGLQQVKEAIEIAQGKEFVENFDGQYEGEIAQGGKNV
SGGQKQRISIARAIYRKPDIYIFDDSFSALDYKTDRALRSELNKETANATTLIVAQRIGTIKEADQIIVLEDGEIIGKGT
HEQLMESCTTYQEIAYSQLSEEELDHVKK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=453802 HUB94_RS10040 WP_110045205.1 1798373..1800142(+) (rcrP) [Paenibacillus cellulosilyticus strain KACC 14175]
ATGCTGAAAATATTTAAGTATCTCACACAAAAAGATTGGCTTCTAATCTTAGTCAGCGTCGTGTTCATTGTTGCCCAGGT
TTTTCTGGATTTAAGGCTGCCAGATTATATGGCGGATATTACGATGCTTATCCAAGCCGAAGGGACAACGATGTCTGATC
TGGTCGTACCAGGCAGTTACATGCTGCTTTGTGCAGTTGGCAGTATGGTTGCAGCGGTCATTGTTGGTTACTTTGCAGCC
CGAATTGCCGCGAGCCTGGCGAAACGACTTCGTGGATTAGTATTTGAACAAACATTATCATTCTCGATGGCCGAGATGAA
TCGCTTCTCGACGTCAAGTTTAATTACTCGTTCAACCAACGATATTACACAAATTCAATTGATTGTAGCGATGGGCATGC
AGGTCATCGTCAAAGCTCCAATTCTAGCCGTCTGGGCGATCATTAAGATCGCGAATAAAAACTTGGAATGGACGACAGCA
ACAGGGCTCGCGATTCTCGTGCTTTGTATTATGCTTGCTGTCATTATCATTTTTGCAATCCCTAAATTTAAGATCATTCA
GACGTTAACGGATAACTTGAATCGTGTGACACGCGAGAATCTAACAGGCATTCGAGTTGTACGCGCCTATAATGCGGAAC
ACTATCAGCAGCAAAAGTTCGAACAAGCCAATCTGGACCTTACCAAGACGAACTTATTTGCGAATCGTATGATGGCACTT
ATGGGTCCTGGAATGACCTTGATTATGTCGGGCTTAAGCGTATCGATTTATTGGATTGGCGCCTATTTAATTAATAACAC
AGGACAGATGGATCGATTGCCGCTGTTCGCTAATATGGTCGTGTTTTCGTCGTATGCCATGCAAGTCGTGATGGCCTTCA
TGATGGTCAGTATGATTTTCATTATGCTGCCTCGTGCCGCGGTATCTGCCAAACGTATTCTGGAAGTGCTGAATATGTCC
GTTTCGATAACCGATGGTAAGGTGTCAGAGGGACATCCAGGTTCTATTGGGGAAGTTGAGTTTAGAAATGTCAGCTTCAC
TTATCCGGACTCGGACGAACCGATCCTTCAGAATATTAGCTTTAAGGCAAGGAGAGGTGAAGTTGTCGCATTTATCGGCG
CAACGGGCAGCGGCAAATCAAGCGTGATGAATTTGATTCCACGTTTCTACGATGCTACTGAAGGAGAAGTGTTAGTGGAT
GGCGTGAATGTCAGGGAGTATGCCCAAGAAGCGCTACACGAGAAAATAGGTTATGTTTCCCAATCCGCCGTGATATTCAG
AGGTACCGTAGCATCCAATGTCGCTTATGGCAATGCGAATCAGACGGAACAGGGTCTGCAACAAGTGAAGGAAGCTATCG
AAATCGCCCAAGGCAAGGAATTCGTAGAGAACTTTGATGGCCAGTATGAAGGTGAAATTGCGCAAGGAGGAAAAAACGTA
TCCGGCGGGCAAAAACAGCGTATATCGATCGCACGTGCGATTTATCGGAAGCCCGACATTTATATTTTCGATGATTCTTT
CTCTGCGTTAGATTATAAGACCGATCGAGCGCTGCGCAGTGAACTGAACAAAGAGACGGCGAATGCCACTACGCTCATTG
TGGCGCAGCGAATTGGAACGATTAAAGAAGCGGATCAAATTATTGTCTTAGAAGATGGAGAAATTATCGGTAAAGGTACG
CATGAACAATTGATGGAAAGCTGTACGACTTATCAAGAAATTGCCTATTCACAGCTTTCGGAGGAGGAATTGGATCATGT
CAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V2YRC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.833

100

0.538