Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HUE65_RS04235 Genome accession   NZ_CP054596
Coordinates   965690..967528 (+) Length   612 a.a.
NCBI ID   WP_032743822.1    Uniprot ID   A0A1S2W1U9
Organism   Bifidobacterium longum subsp. infantis strain PI_006     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 960690..972528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUE65_RS04220 (HUE65_04235) - 961312..962835 (+) 1524 WP_032743819.1 amino acid permease -
  HUE65_RS04225 (HUE65_04240) - 962979..963509 (+) 531 WP_032743820.1 MarR family transcriptional regulator -
  HUE65_RS04230 (HUE65_04245) rcrP 963744..965615 (+) 1872 WP_032743821.1 ABC transporter ATP-binding protein Regulator
  HUE65_RS04235 (HUE65_04250) rcrQ 965690..967528 (+) 1839 WP_032743822.1 ABC transporter ATP-binding protein Regulator
  HUE65_RS04240 (HUE65_04255) - 967680..968687 (-) 1008 WP_050496227.1 FAD:protein FMN transferase -
  HUE65_RS04250 (HUE65_04265) rsmI 969251..970261 (+) 1011 WP_032743823.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HUE65_RS04255 - 970288..970665 (-) 378 WP_179960175.1 hypothetical protein -
  HUE65_RS04260 (HUE65_04275) - 970656..971303 (-) 648 WP_032743824.1 hypothetical protein -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67001.44 Da        Isoelectric Point: 6.5046

>NTDB_id=453789 HUE65_RS04235 WP_032743822.1 965690..967528(+) (rcrQ) [Bifidobacterium longum subsp. infantis strain PI_006]
MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIVALILGAIGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMRS
VDFGAVGHIAWTLVALYAGYAVLGYVQSWMMANVTQRTAQRLRESISVKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMVIMKASQKYFARQQTALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFERYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALNGQIEFGVIVAFMMYIRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGTDHAGGRDVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=453789 HUE65_RS04235 WP_032743822.1 965690..967528(+) (rcrQ) [Bifidobacterium longum subsp. infantis strain PI_006]
ATGCCAAGAGGACCAATGGGCGGCAGGCGCGCCGTCGAAAAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCGTCGCACTCATCCTGGGCGCGATCGGCACCGTCTGTCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGCCTGCCCGCCATCGTCAACGGTAGGCCGGTGATGCGCTCG
GTCGATTTCGGCGCGGTGGGCCACATCGCCTGGACGTTGGTGGCCCTGTACGCGGGATACGCCGTGCTCGGCTATGTGCA
GAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGGCTGCGCGAATCGATCTCGGTCAAGATCAACCGGTTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCCCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATCACCTCGGCGACGTTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGTCATCATGAAGGCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGACGGCTCTGGGCGACGTCAACGGCCACGTCGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCGTACAACGGCGAGGCGGATTCCATCCGCCGCTTCGAACGGTACAACGCGGACCTCTACGAGTCGGGTTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCACTCAACGGCCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAAGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAGCGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGCAGGCCCTGCTCGGCACGGACCATGCGGGCGGGCGCGACGTGAAGGGCGACGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTATGAGATTTCCGG
CGGCTCGATTGCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGC
AGGATACGTGGGTGTTCCGCGGAACCGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCGACAAGCAGATCGAG
GATGCGTGCAAGGCCGTGGGTCTTGACCACTTCATCCGTTCGCTGCCGGACGGCTACGACACCGTGCTCGATGACAAGTC
GTCGCTGTCCCAGGGGCAGAAGCAGCTGCTCACCATCGCCCGCGCGATGGTGCAGGATGCGCCGATCCTGATTCTCGACG
AGGCCACGTCCTCGGTCGATACCCGTACTGAAGAGCTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGGCGCACGTCG
TTCGTGATCGCCCATCGCCTCTCCACGATCCGTGACGCCGACATGATTCTCGTCATGAACCACGGCGATGTGATCGAACG
CGGCACCCATGACGAGCTGCTGGCTGCGGGCGGTTTTTACGCCGATCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2W1U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.252

96.078

0.521