Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   I6I02_RS04365 Genome accession   NZ_CP066093
Coordinates   982227..983297 (-) Length   356 a.a.
NCBI ID   WP_155213113.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 977227..988297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS04350 (I6I02_04350) pstB 977950..978708 (+) 759 WP_002890956.1 phosphate ABC transporter ATP-binding protein PstB -
  I6I02_RS04355 (I6I02_04355) phoU 978737..979390 (+) 654 WP_004182526.1 phosphate signaling complex protein PhoU -
  I6I02_RS04360 (I6I02_04360) - 979524..982064 (+) 2541 WP_198463898.1 M1 family metallopeptidase -
  I6I02_RS04365 (I6I02_04365) xerS 982227..983297 (-) 1071 WP_155213113.1 tyrosine recombinase XerS Machinery gene
  I6I02_RS04370 (I6I02_04370) - 983503..984492 (-) 990 WP_198463899.1 lipoate--protein ligase -
  I6I02_RS04375 (I6I02_04375) - 984616..985743 (+) 1128 WP_232621281.1 hypothetical protein -
  I6I02_RS04380 (I6I02_04380) - 985920..987170 (+) 1251 Protein_863 ISL3 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41430.55 Da        Isoelectric Point: 9.4805

>NTDB_id=453765 I6I02_RS04365 WP_155213113.1 982227..983297(-) (xerS) [Streptococcus salivarius strain FDAARGOS_1045]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDAHDIASIDIKTLENLTKKDME
SFVLFLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLENYLSIRDKRYKAEKQDLALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=453765 I6I02_RS04365 WP_155213113.1 982227..983297(-) (xerS) [Streptococcus salivarius strain FDAARGOS_1045]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTCTTAGAGTATTATCAGTC
TAAACTATCGGTTCCATATTCTTTTACGACCTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
ACTCAGGTATTTCAGATGCTCATGATATTGCCTCAATTGACATCAAAACCCTGGAAAATCTAACTAAAAAAGACATGGAG
TCATTTGTGCTCTTTCTACGTGAACGTCCGTCCTTAAATACCTATTCCAAGAAACAGGGAGTTTCTCAAACAACCATTAA
CCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGTCCTGACGGTGAGCCATATTTCT
ATCGTAACGTCATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACCTTGGCTGCGCGTGCTGAGAATATCAAGCAGAAA
CTTTTTCTAGGCGATGAAACCATGGAATTTCTTGATTATGTTGAAAATGAATACGAAGTTAAGCTCTCAAATCGCGCAAA
ATCTTCGTTTTACAAGAATAAAGAACGTGATTTAGCGATAATAGCCTTGCTACTGGCTTCAGGGGTTCGACTTTCTGAGG
CTGTTAACCTGGACCTTAAAGATATCAATCTGAAAATGATGGTCATTGATGTTACTCGAAAAGGTGGCAAACGAGACTCA
GTTAATGTAGCAAGTTTTGCAAAACCTTATCTTGAAAATTATCTTAGTATCCGTGATAAACGCTATAAGGCTGAAAAGCA
AGACCTTGCCCTATTTTTAACGGAATATCGAGGGGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCCCATAAACTACGACACACTCTGGCAACACGTCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTTAGCCACCAACTTGGCCATGCTTCCACTCAGGTCACTGATCTTTATACTCATATCGTCAATGA
TGAGCAAAAAAACGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(183-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831