Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   I6I02_RS03250 Genome accession   NZ_CP066093
Coordinates   740718..741626 (-) Length   302 a.a.
NCBI ID   WP_198463806.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 735718..746626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS03225 (I6I02_03225) - 736187..736648 (+) 462 WP_198463968.1 GNAT family N-acetyltransferase -
  I6I02_RS03230 (I6I02_03230) - 737019..737912 (+) 894 WP_198463802.1 hypothetical protein -
  I6I02_RS03235 (I6I02_03235) comR/comR1 738018..738926 (-) 909 WP_198463803.1 helix-turn-helix domain-containing protein Regulator
  I6I02_RS03240 (I6I02_03240) - 739084..739803 (-) 720 WP_198463804.1 ABC transporter permease -
  I6I02_RS03245 (I6I02_03245) - 739796..740632 (-) 837 WP_198463805.1 ABC transporter ATP-binding protein -
  I6I02_RS03250 (I6I02_03250) comR 740718..741626 (-) 909 WP_198463806.1 helix-turn-helix domain-containing protein Regulator
  I6I02_RS03255 (I6I02_03255) - 741843..742364 (+) 522 WP_226973104.1 RDD family protein -
  I6I02_RS03260 (I6I02_03260) - 742488..743408 (+) 921 WP_107373180.1 multidrug resistance efflux transporter family protein -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 35673.04 Da        Isoelectric Point: 4.6412

>NTDB_id=453757 I6I02_RS03250 WP_198463806.1 740718..741626(-) (comR) [Streptococcus salivarius strain FDAARGOS_1045]
MSQNIKVEIGKRIRQERERQGLTREQVCDTEEEITVKQLMRIELGRSLPTIVKLQYISDNLGVSLNYLLGETKLDIPEDY
YKAKYKLMKSPVYGDPERIKKKLKDIEELYDNYIEILPEDELFAIDIIERTLNFMVMEEDSLIESVFEDYLTQALKKEAY
SLNDLLLISYYAFRCQDYDYDNERIEKFRHKLIKQELQGDELFNVELIGALSAIAGIYVMHHDYKEMKSVVDKMYVLIDK
TLQQAYKPAVLVFEAKYYLFYENNIDKATELYHTATVLAEAFGDQVFIKNLKMEMEKDLNTK

Nucleotide


Download         Length: 909 bp        

>NTDB_id=453757 I6I02_RS03250 WP_198463806.1 740718..741626(-) (comR) [Streptococcus salivarius strain FDAARGOS_1045]
ATGTCTCAGAATATTAAAGTAGAAATTGGAAAAAGAATTCGTCAAGAACGTGAGCGCCAAGGGCTAACTCGAGAGCAAGT
TTGTGATACTGAGGAAGAAATAACAGTAAAACAACTGATGAGAATTGAACTCGGTCGCTCATTACCAACTATTGTCAAAC
TGCAGTATATCAGTGATAATTTGGGAGTTTCCCTAAACTATTTGCTAGGTGAAACAAAACTAGACATTCCTGAAGACTAT
TACAAGGCTAAATATAAACTCATGAAGTCTCCTGTCTATGGCGACCCCGAACGTATCAAGAAGAAGCTAAAAGATATTGA
GGAACTCTACGACAACTATATTGAGATTCTACCAGAGGACGAGCTTTTTGCTATTGATATCATTGAAAGAACGTTAAATT
TTATGGTTATGGAAGAAGATAGTCTTATTGAATCTGTATTTGAAGACTATTTGACTCAAGCGTTGAAAAAAGAAGCATAT
TCCTTAAATGACCTTCTATTAATTTCATACTATGCATTTCGATGTCAGGATTATGACTATGATAATGAGAGAATTGAAAA
ATTTAGACATAAATTAATTAAGCAAGAATTACAAGGTGATGAGCTGTTTAACGTTGAACTGATAGGTGCTTTATCAGCTA
TAGCTGGGATATATGTGATGCATCATGACTATAAAGAAATGAAGTCTGTTGTTGATAAAATGTATGTTCTTATTGATAAG
ACACTTCAACAAGCTTATAAACCCGCAGTACTTGTATTTGAAGCAAAATACTATCTCTTCTATGAGAATAACATAGATAA
AGCAACAGAGCTCTATCATACAGCCACCGTACTAGCCGAAGCCTTCGGCGACCAAGTCTTCATCAAAAATCTTAAAATGG
AAATGGAAAAAGATTTAAATACGAAATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(77-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

41.034

96.026

0.394
  comR Streptococcus thermophilus LMD-9

40.69

96.026

0.391
  comR Streptococcus thermophilus LMG 18311

40.69

96.026

0.391
  comR Streptococcus salivarius SK126

41.197

94.04

0.387
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

39.189

98.013

0.384