Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HR116_RS04605 Genome accession   NZ_CP054591
Coordinates   1034000..1034557 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CDN118     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1029000..1039557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR116_RS04590 pilY1 1029092..1032583 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  HR116_RS04595 pilX 1032595..1033182 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HR116_RS04600 pilW 1033179..1034003 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HR116_RS04605 pilV 1034000..1034557 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HR116_RS04610 - 1034548..1035054 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HR116_RS04615 - 1035160..1035669 (-) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  HR116_RS04620 thiO 1035804..1036898 (+) 1095 WP_023084775.1 glycine oxidase ThiO -
  HR116_RS04625 pilR 1036944..1038281 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=453757 HR116_RS04605 WP_003119423.1 1034000..1034557(-) (pilV) [Pseudomonas aeruginosa strain CDN118]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=453757 HR116_RS04605 WP_003119423.1 1034000..1034557(-) (pilV) [Pseudomonas aeruginosa strain CDN118]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995