Detailed information NTG0453749

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: HT135_RS19825
• Genome accession: NZ_CP054584
• Coordinates: 3859535..3860680 (+)
• Length: 381 a.a.
• NCBI ID: WP_024123222.1
• Uniprot ID: A0A9Q6ABW7
• Organism: Bacillus halotolerans strain KKD1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3854535..3865680

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HT135_RS19805 (HT135_19800)	-	3855410..3856687 (+)	1278	WP_106019733.1	M16 family metallopeptidase	-
HT135_RS19810 (HT135_19805)	-	3856684..3857385 (+)	702	WP_106019734.1	bacteriocin biosynthesis protein AlbG	-
HT135_RS19815 (HT135_19810)	-	3857392..3857748 (-)	357	Protein_3885	YncE family protein	-
HT135_RS19820 (HT135_19815)	-	3857948..3859306 (-)	1359	WP_106019735.1	YncE family protein	-
HT135_RS19825 (HT135_19820)	rapF	3859535..3860680 (+)	1146	WP_024123222.1	tetratricopeptide repeat protein	Regulator
HT135_RS19830 (HT135_19825)	-	3860664..3860783 (+)	120	WP_024123223.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
HT135_RS19835 (HT135_19830)	speB	3860890..3861762 (-)	873	WP_106019736.1	agmatinase	-
HT135_RS19840 (HT135_19835)	speE	3861823..3862653 (-)	831	WP_064815948.1	spermidine synthase	-
HT135_RS19845 (HT135_19840)	-	3862854..3864929 (+)	2076	WP_106019737.1	transglycosylase domain-containing protein	-
HT135_RS19850 (HT135_19845)	-	3864962..3865258 (-)	297	WP_223203888.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45602.17 Da
• Isoelectric Point: 4.8579

>NTDB_id=453749 HT135_RS19825 WP_024123222.1 3859535..3860680(+) (rapF) [Bacillus halotolerans strain KKD1]
MTSVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLENMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYILAIQFFKKAESKLTFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYNEQTTYDIRMIQCQSLFGANFLDLKQYDKAIAHFQKAYTLAEAAQQPQLMGRTLYNIALCKQNQHSLES
AIEYVKKSIHVFEESKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGREYSIAAGDTVYLMEFEFLESLYLSGPDEEAI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASTYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=453749 HT135_RS19825 WP_024123222.1 3859535..3860680(+) (rapF) [Bacillus halotolerans strain KKD1]
GTGACAAGTGTCATATCTTCTTCTTCCGTTGGAGAAAAGATTAATGAATGGTATATGTACATACGCCGATTCAGCATACC
GGATGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGACCAGGATCTTCATTTGTATTATT
CACTGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTTGAACCGTTAGAAAACATGCGGATAGAGGAACAGCCGCGA
CTGTCCGATTTGCTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGACTGCTTGAATACTACTTTAATTTCTTCAG
AGGTATGTACGAACTGGACCGCCGGGAATATATATTAGCCATTCAATTTTTTAAAAAAGCAGAGAGCAAACTGACTTTTG
TTAAAGATAAAATTGATAAAGCTGAGTTCTTTTTCAAAATGTCAGAAGTTTATTACTATATGAAGCAAACTTATGTGTCT
ATGGACTATGCACGTCAAGCCTTTGAAATATACAACGAACAAACTACATATGATATCAGAATGATTCAATGCCAATCCCT
GTTTGGAGCTAACTTTTTGGATCTGAAACAGTATGATAAAGCAATTGCTCATTTCCAAAAAGCTTATACACTTGCTGAGG
CGGCACAGCAGCCGCAGCTAATGGGAAGAACGCTTTATAATATTGCACTTTGCAAGCAAAACCAACACAGTCTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCATGTATTTGAAGAATCGAAAATGCTTCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCTTGTGAATATCATAAAAAAGGAAGAGAATATTCAATAG
CTGCCGGAGACACTGTGTACTTAATGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCTGATGAAGAGGCAATA
GAAAAATGTTTTGTTTTCCTTGAAAGTAAAATGATGTATGCTGATATTGAAGACTTTGCACTCGATGTTGCTAAGTATTA
TCATCAGCAGGAAAATTACAAAAAAGCATCTACTTATTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_8) (193-213)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	80.052	100	0.801
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57