Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   HT135_RS14845 Genome accession   NZ_CP054584
Coordinates   2866045..2866791 (-) Length   248 a.a.
NCBI ID   WP_106020201.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KKD1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2861045..2871791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS14820 (HT135_14815) mreC 2861453..2862325 (-) 873 WP_010335163.1 rod shape-determining protein MreC -
  HT135_RS14825 (HT135_14820) mreB 2862356..2863369 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  HT135_RS14830 (HT135_14825) radC 2863461..2864156 (-) 696 WP_024122357.1 RadC family protein -
  HT135_RS14835 (HT135_14830) - 2864194..2864763 (-) 570 WP_024122358.1 Maf family nucleotide pyrophosphatase -
  HT135_RS14840 (HT135_14835) - 2864914..2865912 (-) 999 WP_106020200.1 SPOR domain-containing protein -
  HT135_RS14845 (HT135_14840) comC 2866045..2866791 (-) 747 WP_106020201.1 prepilin peptidase Machinery gene
  HT135_RS14850 (HT135_14845) - 2866932..2868224 (-) 1293 WP_106020202.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  HT135_RS14855 (HT135_14850) valS 2868284..2870926 (-) 2643 WP_106020203.1 valine--tRNA ligase -
  HT135_RS14860 (HT135_14855) - 2871375..2871566 (+) 192 WP_024122364.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26517.14 Da        Isoelectric Point: 9.7803

>NTDB_id=453733 HT135_RS14845 WP_106020201.1 2866045..2866791(-) (comC) [Bacillus halotolerans strain KKD1]
MIPILFVLGLILGSFYYTAGCRIPLHMSIINPRSACSFCRRTLTPAELIPVLSFALLKGKCKSCGQKLSLMYPAAELSTA
CLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDVKLFAVIGLVLGVKMLAAAFFFSVFIGALYGAAAVLFGRLARKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKTALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=453733 HT135_RS14845 WP_106020201.1 2866045..2866791(-) (comC) [Bacillus halotolerans strain KKD1]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTACACGGCAGGATGCCGTATCCCCTTACACAT
GTCCATCATAAACCCTCGTTCGGCATGTTCTTTTTGCCGGAGAACCTTAACTCCGGCAGAATTAATCCCTGTTTTATCTT
TTGCTCTGCTAAAAGGCAAATGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTATCCAGCGGCAGAGCTCTCGACAGCG
TGTTTATTTGCAGCCGCGGGATTTCGTTTTGGTTTGTCTTGGGAACTGATTGTTGCGTTGCTGTTTCTTTCTCTTCTTAT
CATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCGGCTGCCGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATGTTAAATTATTTGCCGTTATCGGCCTTGTGCTTGGTGTGAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCAGTTTTTATAGGCGCATTGTACGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGATTCCCTTTGCCCCGGCAATTGCGGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAACGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

81.048

100

0.81