Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HT135_RS13920 Genome accession   NZ_CP054584
Coordinates   2703848..2704273 (-) Length   141 a.a.
NCBI ID   WP_095713328.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KKD1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2698848..2709273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS22190 - 2699087..2699221 (-) 135 WP_010335019.1 hypothetical protein -
  HT135_RS13895 (HT135_13890) - 2699299..2700030 (-) 732 WP_101864558.1 SGNH/GDSL hydrolase family protein -
  HT135_RS13900 (HT135_13895) - 2700277..2701029 (-) 753 WP_024122121.1 peptidoglycan recognition protein family protein -
  HT135_RS13905 (HT135_13900) - 2701224..2701850 (+) 627 WP_106020127.1 TVP38/TMEM64 family protein -
  HT135_RS13910 (HT135_13905) gnd 2701872..2702765 (-) 894 WP_106020128.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  HT135_RS13915 (HT135_13910) - 2703086..2703814 (+) 729 WP_106020129.1 YqeB family protein -
  HT135_RS13920 (HT135_13915) nucA/comI 2703848..2704273 (-) 426 WP_095713328.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HT135_RS13925 (HT135_13920) sigK 2704450..2705178 (+) 729 WP_174754429.1 RNA polymerase sporulation sigma factor SigK -
  HT135_RS22315 - 2705178..2705288 (+) 111 Protein_2734 hypothetical protein -
  HT135_RS13930 (HT135_13925) - 2705421..2705580 (-) 160 Protein_2735 recombinase family protein -
  HT135_RS13940 (HT135_13935) - 2706205..2706762 (-) 558 WP_101861070.1 helix-turn-helix domain-containing protein -
  HT135_RS13945 (HT135_13940) - 2706906..2708123 (+) 1218 WP_106020130.1 CynX/NimT family MFS transporter -
  HT135_RS13950 (HT135_13945) - 2708266..2708438 (-) 173 Protein_2738 recombinase family protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15496.62 Da        Isoelectric Point: 5.2217

>NTDB_id=453729 HT135_RS13920 WP_095713328.1 2703848..2704273(-) (nucA/comI) [Bacillus halotolerans strain KKD1]
MKRWMAMLLLAAAVFLGLLGKDMTAPQQVKGAALYDKVLYFPLSRYPETGDHIRDAIAEGHSDICTIDRDGADKRREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTKVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=453729 HT135_RS13920 WP_095713328.1 2703848..2704273(-) (nucA/comI) [Bacillus halotolerans strain KKD1]
ATGAAAAGATGGATGGCAATGCTTCTTCTGGCGGCAGCAGTTTTTCTTGGTTTATTGGGAAAGGATATGACGGCTCCGCA
ACAGGTCAAGGGGGCTGCTTTATATGACAAAGTTTTATATTTTCCGTTGTCTCGTTATCCGGAAACCGGGGATCATATAA
GAGATGCGATTGCCGAAGGACATTCTGATATATGTACAATTGATCGTGATGGAGCGGACAAAAGGCGGGAGGAATCATTA
AAAGGAATTCCGACGAAGCCTGGCTACGATCGGGATGAATGGCCGATGGCAGTTTGTGAAGAAGGAGGTGCCGGAGCCGA
TGTCCGATATGTAACGCCTTCTGATAATCGCGGCGCCGGTTCATGGGTAGGAAATCAAATGAGCAGTTATCCAGATGGCA
CCAAAGTGTTGTTTATTGTTCAGTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.905

89.362

0.553