Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HT135_RS13670 Genome accession   NZ_CP054584
Coordinates   2660279..2661046 (-) Length   255 a.a.
NCBI ID   WP_106020116.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KKD1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2655279..2666046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS13650 (HT135_13645) - 2655453..2656265 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  HT135_RS13655 (HT135_13650) ccpN 2656291..2656929 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  HT135_RS13660 (HT135_13655) glyS 2657063..2659102 (-) 2040 WP_106020115.1 glycine--tRNA ligase subunit beta -
  HT135_RS13665 (HT135_13660) glyQ 2659095..2659982 (-) 888 WP_106020343.1 glycine--tRNA ligase subunit alpha -
  HT135_RS13670 (HT135_13665) recO 2660279..2661046 (-) 768 WP_106020116.1 DNA repair protein RecO Machinery gene
  HT135_RS13675 (HT135_13670) - 2661083..2661226 (-) 144 WP_024122087.1 YqzL family protein -
  HT135_RS13680 (HT135_13675) era 2661370..2662275 (-) 906 WP_101864543.1 GTPase Era -
  HT135_RS13685 (HT135_13680) cdd 2662256..2662666 (-) 411 WP_024122088.1 cytidine deaminase -
  HT135_RS13690 (HT135_13685) - 2662780..2663157 (-) 378 WP_101864544.1 diacylglycerol kinase family protein -
  HT135_RS13695 (HT135_13690) ybeY 2663138..2663611 (-) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  HT135_RS13700 (HT135_13695) pgpH 2663612..2665747 (-) 2136 WP_106020117.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.04 Da        Isoelectric Point: 8.3145

>NTDB_id=453725 HT135_RS13670 WP_106020116.1 2660279..2661046(-) (recO) [Bacillus halotolerans strain KKD1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSHDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=453725 HT135_RS13670 WP_106020116.1 2660279..2661046(-) (recO) [Bacillus halotolerans strain KKD1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCGGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCATGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
GCCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTTTCAAGGATTGGCAATGTGTCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.118

100

0.941