Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HT135_RS12160 Genome accession   NZ_CP054584
Coordinates   2393473..2394093 (+) Length   206 a.a.
NCBI ID   WP_024121833.1    Uniprot ID   A0A9Q6A9A0
Organism   Bacillus halotolerans strain KKD1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2388473..2399093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS12120 (HT135_12115) - 2389611..2390117 (-) 507 WP_106020332.1 PTS sugar transporter subunit IIA -
  HT135_RS12125 (HT135_12120) - 2390254..2390673 (+) 420 WP_106020010.1 Hsp20/alpha crystallin family protein -
  HT135_RS12130 (HT135_12125) - 2390695..2391069 (-) 375 WP_024121828.1 YppG family protein -
  HT135_RS12135 (HT135_12130) - 2391257..2391445 (+) 189 WP_106020011.1 YppF family protein -
  HT135_RS12140 (HT135_12135) - 2391480..2391851 (-) 372 WP_024121830.1 YppE family protein -
  HT135_RS12145 (HT135_12140) - 2391897..2392142 (-) 246 WP_095713163.1 DUF5446 family protein -
  HT135_RS12150 (HT135_12145) sspM 2392340..2392444 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  HT135_RS12155 (HT135_12150) - 2392470..2393432 (-) 963 WP_106020012.1 DUF2515 domain-containing protein -
  HT135_RS12160 (HT135_12155) recU 2393473..2394093 (+) 621 WP_024121833.1 Holliday junction resolvase RecU Machinery gene
  HT135_RS12165 (HT135_12160) - 2394115..2396862 (+) 2748 WP_106020013.1 PBP1A family penicillin-binding protein -
  HT135_RS12170 (HT135_12165) - 2396935..2397429 (-) 495 WP_103671772.1 YpoC family protein -
  HT135_RS12175 (HT135_12170) nth 2397426..2398085 (-) 660 WP_010334708.1 endonuclease III -
  HT135_RS12180 (HT135_12175) dnaD 2398104..2398802 (-) 699 WP_044155229.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23934.13 Da        Isoelectric Point: 9.7224

>NTDB_id=453713 HT135_RS12160 WP_024121833.1 2393473..2394093(+) (recU) [Bacillus halotolerans strain KKD1]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFGQVYFLEADKLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=453713 HT135_RS12160 WP_024121833.1 2393473..2394093(+) (recU) [Bacillus halotolerans strain KKD1]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGTCAGGTTTATTTTTTAGAAGCCGATAAGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCCATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

97.087

100

0.971