Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   HT135_RS10455 Genome accession   NZ_CP054584
Coordinates   2123908..2125038 (+) Length   376 a.a.
NCBI ID   WP_106021717.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KKD1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2110875..2133312 2123908..2125038 within 0


Gene organization within MGE regions


Location: 2110875..2133312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS10360 (HT135_10360) - 2110875..2111270 (-) 396 WP_024121680.1 UPF0715 family protein -
  HT135_RS22225 - 2111348..2111623 (-) 276 WP_024121681.1 hypothetical protein -
  HT135_RS10365 (HT135_10365) - 2112167..2112787 (-) 621 WP_174754425.1 lytic polysaccharide monooxygenase auxiliary activity family 9 protein -
  HT135_RS10370 (HT135_10370) - 2113238..2113741 (+) 504 WP_151175083.1 DinB family protein -
  HT135_RS22025 - 2113948..2114166 (+) 219 WP_106022521.1 hypothetical protein -
  HT135_RS10375 (HT135_10375) - 2114312..2114824 (-) 513 WP_095713069.1 GNAT family N-acetyltransferase -
  HT135_RS10380 (HT135_10380) - 2115193..2115351 (-) 159 Protein_2018 N-acetyltransferase -
  HT135_RS10385 (HT135_10385) - 2115672..2116409 (-) 738 WP_106022520.1 hypothetical protein -
  HT135_RS10390 (HT135_10390) - 2116497..2117429 (-) 933 WP_244637169.1 DUF5677 domain-containing protein -
  HT135_RS10395 (HT135_10395) - 2117644..2117808 (-) 165 WP_151175084.1 hypothetical protein -
  HT135_RS10400 (HT135_10400) - 2117861..2118229 (-) 369 WP_106022517.1 hypothetical protein -
  HT135_RS10405 (HT135_10405) - 2118773..2118989 (-) 217 Protein_2023 hypothetical protein -
  HT135_RS10410 (HT135_10410) - 2118993..2119244 (-) 252 Protein_2024 hypothetical protein -
  HT135_RS10415 (HT135_10415) - 2119315..2119494 (+) 180 WP_106022516.1 hypothetical protein -
  HT135_RS10420 (HT135_10420) - 2119582..2120205 (-) 624 WP_024571441.1 hypothetical protein -
  HT135_RS10425 (HT135_10425) - 2120707..2120937 (+) 231 WP_127696872.1 hypothetical protein -
  HT135_RS22230 - 2120945..2121004 (-) 60 WP_255004945.1 hypothetical protein -
  HT135_RS22160 - 2121120..2121266 (-) 147 WP_316961074.1 UPF0715 family protein -
  HT135_RS22035 - 2121577..2121722 (-) 146 Protein_2030 XRE family transcriptional regulator -
  HT135_RS10435 (HT135_10435) - 2121994..2122470 (-) 477 WP_223257246.1 hypothetical protein -
  HT135_RS10440 (HT135_10440) - 2122564..2122797 (-) 234 WP_106021718.1 hypothetical protein -
  HT135_RS10445 (HT135_10445) - 2123145..2123405 (+) 261 WP_081638323.1 hypothetical protein -
  HT135_RS22305 - 2123730..2123774 (+) 45 WP_372588338.1 hypothetical protein -
  HT135_RS10455 (HT135_10455) rapC 2123908..2125038 (+) 1131 WP_106021717.1 tetratricopeptide repeat protein Regulator
  HT135_RS10460 (HT135_10460) - 2125028..2125171 (+) 144 WP_024121692.1 hypothetical protein -
  HT135_RS10465 (HT135_10465) - 2125200..2126087 (-) 888 Protein_2037 DNA polymerase thumb domain-containing protein -
  HT135_RS10470 (HT135_10470) ppsA 2126381..2128984 (-) 2604 WP_106021716.1 phosphoenolpyruvate synthase -
  HT135_RS10480 - 2130787..2130871 (+) 85 Protein_2040 putative holin-like toxin -
  HT135_RS22165 - 2131530..2131859 (-) 330 WP_338122393.1 tyrosine-type recombinase/integrase -
  HT135_RS22170 - 2131949..2132584 (-) 636 WP_395939735.1 tyrosine-type recombinase/integrase -
  HT135_RS22040 - 2132521..2132667 (-) 147 WP_223203879.1 hypothetical protein -
  HT135_RS10490 (HT135_10485) - 2132893..2133312 (-) 420 WP_024121695.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44276.06 Da        Isoelectric Point: 6.1971

>NTDB_id=453712 HT135_RS10455 WP_106021717.1 2123908..2125038(+) (rapC) [Bacillus halotolerans strain KKD1]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEAEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEARPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYINAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYERDKSDLLPHTLFTLTQIHFKMKDIEKALVLYKKGIEKAKAINDDVLIAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=453712 HT135_RS10455 WP_106021717.1 2123908..2125038(+) (rapC) [Bacillus halotolerans strain KKD1]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGCTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGCACGTCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAGCTTAAAGGTGTCCTGGAATACTACTGCAATTTCTTTAGAGGAAT
GTATGAATTTGATAAGAAGGATTATATAAATGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ATGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCCTAAAAGACTCAAAAGCCATAA
ACAAACACAAACTAATTGGTGCATCATTATATAATTTGGGAAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCATTGTATGAAAGAGATAAAAGCGATCTCCTCCCTCACACGTTATTTACGCTGACACA
AATTCACTTTAAAATGAAGGATATTGAAAAAGCCTTGGTTCTTTACAAAAAAGGAATCGAGAAAGCAAAAGCAATAAATG
ACGATGTCTTAATTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

44.855

100

0.452