Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HT135_RS08035 Genome accession   NZ_CP054584
Coordinates   1556402..1556680 (+) Length   92 a.a.
NCBI ID   WP_095714714.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KKD1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1551402..1561680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS08015 (HT135_08015) - 1552594..1553505 (+) 912 WP_101865186.1 ketopantoate reductase family protein -
  HT135_RS08020 (HT135_08020) - 1553533..1554765 (-) 1233 WP_106020639.1 aminopeptidase -
  HT135_RS08025 (HT135_08025) - 1554879..1555010 (-) 132 WP_024121251.1 protein YkpC -
  HT135_RS08030 (HT135_08030) mreBH 1555113..1556120 (-) 1008 WP_024121252.1 cell shape-determining protein MreBH -
  HT135_RS08035 (HT135_08035) abrB 1556402..1556680 (+) 279 WP_095714714.1 transcriptional regulator AbhA Regulator
  HT135_RS08040 (HT135_08040) kinC 1556871..1558157 (+) 1287 WP_095714715.1 two-component sensor histidine kinase KinC -
  HT135_RS08045 (HT135_08045) - 1558173..1559003 (+) 831 WP_106020369.1 gamma-glutamylcyclotransferase -
  HT135_RS08050 (HT135_08050) ktrC 1559075..1559740 (+) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  HT135_RS08055 (HT135_08055) ade 1559897..1561630 (+) 1734 WP_106020368.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10270.09 Da        Isoelectric Point: 5.8872

>NTDB_id=453707 HT135_RS08035 WP_095714714.1 1556402..1556680(+) (abrB) [Bacillus halotolerans strain KKD1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVEGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=453707 HT135_RS08035 WP_095714714.1 1556402..1556680(+) (abrB) [Bacillus halotolerans strain KKD1]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCTATTAAAGACAGCATTGAGTTTTTTGTCGAGGGCGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAGTACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGCGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

98.913

0.565