Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABLL_RS05700 Genome accession   NC_017192
Coordinates   1139532..1140881 (-) Length   449 a.a.
NCBI ID   WP_014473826.1    Uniprot ID   -
Organism   Arcobacter sp. L     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1134532..1145881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLL_RS05675 (ABLL_1110) murJ 1134758..1136059 (-) 1302 WP_014473821.1 murein biosynthesis integral membrane protein MurJ -
  ABLL_RS05680 (ABLL_1111) - 1136059..1137633 (-) 1575 WP_014473822.1 endonuclease/exonuclease/phosphatase family protein -
  ABLL_RS05685 (ABLL_1112) - 1137724..1138383 (-) 660 WP_014473823.1 ferritin family protein -
  ABLL_RS05690 (ABLL_1113) - 1138641..1139045 (+) 405 WP_014473824.1 Fur family transcriptional regulator -
  ABLL_RS05695 (ABLL_1114) ybeY 1139070..1139489 (-) 420 WP_014473825.1 rRNA maturation RNase YbeY -
  ABLL_RS05700 (ABLL_1115) radA 1139532..1140881 (-) 1350 WP_014473826.1 DNA repair protein RadA Machinery gene
  ABLL_RS05705 (ABLL_1116) - 1140979..1141455 (+) 477 WP_014473827.1 ribonuclease HI -
  ABLL_RS05710 (ABLL_1117) - 1141461..1142447 (-) 987 WP_014473828.1 lipid A deacylase LpxR family protein -
  ABLL_RS05715 (ABLL_1118) - 1142509..1143072 (+) 564 WP_014473829.1 YqiA/YcfP family alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49427.86 Da        Isoelectric Point: 6.3794

>NTDB_id=45369 ABLL_RS05700 WP_014473826.1 1139532..1140881(-) (radA) [Arcobacter sp. L]
MAKKKITLFECQHCGEQSTKWLGKCPNCGSWDSFIELNQEQQEVLKHSSKIINTTSKAKPITQIEQDDVTRFSSFNYEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSIAKSGKKVLYVSGEESAGQIKLRANRLEANHDELFLLSEIKLEEIQD
ELLRENYEVCIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTAEGLISAKDIASKFFDKNKSQSGSALTVTMEGSRAIILEVQALVTESTYPN
PKRSATGFDANRLTMLLALLEKKIDLPLNNYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESAFIGEVSLTGE
IKDVYSIDLRLKEAQAQGIKKAVIAQKTNLKLDIKTFAVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=45369 ABLL_RS05700 WP_014473826.1 1139532..1140881(-) (radA) [Arcobacter sp. L]
ATGGCTAAGAAAAAAATAACACTTTTTGAATGTCAACATTGTGGAGAACAATCTACAAAATGGCTTGGAAAATGTCCAAA
TTGTGGCTCATGGGACAGTTTTATTGAATTAAACCAAGAACAACAAGAAGTTTTAAAACACTCTTCAAAAATTATAAATA
CAACATCAAAAGCAAAACCAATAACCCAAATAGAACAAGATGATGTTACAAGATTTTCTTCTTTTAACTATGAATTTGAC
TTAGTTTTAGGAGGAGGAATAGTTCCAGGAAGTTTAACTTTAATTGGTGGAAGCCCAGGAGTTGGAAAATCAACACTATT
ACTAAAAGTTGCTGGAAGTATCGCAAAATCTGGGAAAAAAGTTCTTTATGTATCAGGAGAAGAGAGTGCTGGTCAAATAA
AACTACGAGCAAATAGACTTGAAGCAAATCATGATGAACTCTTTTTATTAAGCGAAATAAAACTTGAAGAGATACAAGAT
GAACTTTTAAGAGAAAATTATGAAGTTTGTATTATAGATTCTATTCAAACTATCTATTCTTCAAATCTAACAAGCGCACC
AGGAAGTGTTTCACAAGTTCGAGAAATAACATTTGAACTAATGAGAAAAGCAAAAGAATCAAATATTGCTATGTTTATTA
TTGGTCATATTACAAAAGATGGAAGTATTGCAGGTCCTAGAGTTTTAGAACATATGGTTGATACTGTTTTATACTTTGAA
GGAGAAGCTAGTAGAGAATTGCGAATGCTTCGAGGTTTTAAAAATCGTTTTGGAAGTACTAGCGAAATTGGTATTTTTGA
AATGACAGCAGAAGGACTTATTAGTGCAAAAGATATAGCTTCAAAATTTTTTGATAAGAATAAATCCCAAAGTGGTTCAG
CTTTAACTGTAACAATGGAAGGAAGTCGTGCAATTATCCTTGAAGTTCAAGCACTTGTGACAGAAAGTACTTATCCAAAT
CCAAAAAGAAGTGCAACTGGTTTTGATGCAAATAGACTTACTATGCTTCTTGCACTTTTAGAGAAAAAAATAGATTTACC
ACTAAATAATTATGATGTATTTATAAACATAAGTGGTGGAATAAAAATCAAAGAGAGTTCAGCTGACTTAGCTGTAATTG
CTGCTATTATTTCATCATTTAGGGATAGACCTATTTCAAAAGAGTCTGCTTTTATCGGGGAAGTTTCACTTACAGGTGAA
ATAAAAGATGTTTATTCTATTGATTTAAGATTAAAAGAAGCACAAGCTCAAGGTATAAAAAAAGCTGTTATTGCTCAAAA
AACAAATTTAAAACTTGATATTAAGACTTTTGCAGTTGATGAAGTCTCTAAAATGATAGAATTATTTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-427)

AAA domain (AAA_25)

(82-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

47.577

100

0.481
  radA Streptococcus pneumoniae Rx1

47.577

100

0.481
  radA Streptococcus pneumoniae D39

47.577

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.577

100

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

50

95.768

0.479
  radA Streptococcus mitis NCTC 12261

49.42

95.991

0.474
  radA Streptococcus mitis SK321

49.42

95.991

0.474

Multiple sequence alignment