Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HT135_RS00585 Genome accession   NZ_CP054584
Coordinates   106875..108251 (+) Length   458 a.a.
NCBI ID   WP_106021667.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KKD1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101875..113251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS00565 (HT135_00565) ctsR 102228..102692 (+) 465 WP_010332747.1 transcriptional regulator CtsR -
  HT135_RS00570 (HT135_00570) - 102706..103263 (+) 558 WP_095714843.1 UvrB/UvrC motif-containing protein -
  HT135_RS00575 (HT135_00575) - 103263..104354 (+) 1092 WP_106021668.1 protein arginine kinase -
  HT135_RS00580 (HT135_00580) clpC 104351..106783 (+) 2433 WP_010332750.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  HT135_RS00585 (HT135_00585) radA 106875..108251 (+) 1377 WP_106021667.1 DNA repair protein RadA Machinery gene
  HT135_RS00590 (HT135_00590) disA 108255..109337 (+) 1083 WP_003242042.1 DNA integrity scanning diadenylate cyclase DisA -
  HT135_RS00595 (HT135_00595) - 109457..110557 (+) 1101 WP_059291688.1 PIN/TRAM domain-containing protein -
  HT135_RS00600 (HT135_00600) ispD 110572..111270 (+) 699 WP_106021666.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HT135_RS00605 (HT135_00605) ispF 111263..111739 (+) 477 WP_099043918.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49514.04 Da        Isoelectric Point: 8.2443

>NTDB_id=453680 HT135_RS00585 WP_106021667.1 106875..108251(+) (radA) [Bacillus halotolerans strain KKD1]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSTRHVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIEEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLIAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=453680 HT135_RS00585 WP_106021667.1 106875..108251(+) (radA) [Bacillus halotolerans strain KKD1]
ATGGCTAAAACAAAATCCAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCAGCTTTTTCTCATTCTGTTC
AAACCGTACAGAAACCTTCCCCCATAACATCAATCGAAACATCAGAAGAACCCCGGGTTAAAACACAGCTCGGCGAGTTT
AACAGAGTGCTCGGCGGCGGTGTGGTGAAGGGCTCACTTGTTTTAATTGGCGGGGACCCCGGCATCGGAAAATCGACCTT
ATTACTGCAAGTATCCGCTCAGTTATCTGGTTCAACACGTCATGTTCTGTACATTTCAGGAGAAGAATCGGTAAAACAAA
CGAAATTAAGAGCAGACCGTCTGGGCATAAATAATCCCTCACTGCATGTTTTATCCGAAACCGATATGGAGTATATTTCG
TCTGCTATAGAAGAGATGAATCCAGCGTTTGTGGTTGTTGACTCTATTCAAACGGTCTATCAAAGCGATATTACATCGGC
TCCCGGCAGTGTGTCACAGGTAAGAGAATGTACAGCCGAGCTGATGAAAATTGCAAAGACAAAAGGTATTCCGATATTTA
TTGTAGGTCACGTAACAAAAGAAGGATCCATCGCGGGGCCGAGACTTCTGGAGCATATGGTTGACACTGTTTTATACTTT
GAAGGAGAGCGTCACCATACTTTCCGAATCTTACGGGCTGTAAAAAACCGCTTTGGTTCTACAAACGAAATGGGTATTTT
TGAAATGCGGGAAGAAGGGCTTACTGAGGTACTGAATCCTTCGGAAATCTTCTTAGAAGAGCGTTCGGCGGGATCGGCGG
GGTCGAGCATAACGGCTTCTATGGAAGGTACAAGGCCGATTCTTGTTGAAATTCAGGCGCTCATCTCGCCAACAAGCTTT
GGCAATCCGCGGCGCATGGCAACAGGGATAGATCATAACAGGGTGTCACTGTTAATAGCTGTGTTAGAAAAAAGAGTAGG
GCTGCTGCTGCAAAATCAGGATGCATATTTGAAGGTAGCGGGCGGCGTCAAACTTGATGAACCTGCGATTGATCTTGCTA
TAGCGGTCAGTATCGCATCAAGCTTTAGAGACACACCTCCAAATCCTGCAGATTGCTTTATAGGAGAAGTGGGATTAACC
GGAGAAGTCCGCCGGGTATCAAGAATTGAACAGCGTGTAAAAGAAGCGGCAAAGCTTGGTTTTAAACGCATGATCATACC
TGCGGCAAATCTGGATGGATGGACGAAACCAAAAGGGATTGAGGTCATCGGAGTAGCAAATGTTGCAGAGGCACTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

AAA domain (AAA_25)

(72-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

98.253

100

0.983
  radA Streptococcus pneumoniae Rx1

63.576

98.908

0.629
  radA Streptococcus pneumoniae D39

63.576

98.908

0.629
  radA Streptococcus pneumoniae R6

63.576

98.908

0.629
  radA Streptococcus pneumoniae TIGR4

63.576

98.908

0.629
  radA Streptococcus mitis NCTC 12261

63.576

98.908

0.629
  radA Streptococcus mitis SK321

63.355

98.908

0.627