Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ABLL_RS05130 Genome accession   NC_017192
Coordinates   1028866..1030716 (-) Length   616 a.a.
NCBI ID   WP_014473719.1    Uniprot ID   A0AAE7BCP7
Organism   Arcobacter sp. L     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1023866..1035716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLL_RS05105 (ABLL_1003) - 1025071..1025712 (-) 642 WP_014473714.1 adenylate kinase -
  ABLL_RS05110 (ABLL_1004) - 1025844..1026413 (+) 570 WP_014473715.1 adenylate kinase -
  ABLL_RS05115 (ABLL_1005) - 1026413..1027174 (+) 762 WP_014473716.1 molybdopterin-binding protein -
  ABLL_RS05120 (ABLL_1006) - 1027176..1027844 (-) 669 WP_014473717.1 tetratricopeptide repeat protein -
  ABLL_RS05125 (ABLL_1007) - 1027841..1028863 (-) 1023 WP_014473718.1 alanine racemase -
  ABLL_RS05130 (ABLL_1008) uvrC 1028866..1030716 (-) 1851 WP_014473719.1 excinuclease ABC subunit UvrC Machinery gene
  ABLL_RS05135 (ABLL_1009) - 1030834..1031478 (+) 645 WP_014473720.1 N-acetyltransferase -
  ABLL_RS05140 (ABLL_1010) - 1031462..1032757 (-) 1296 WP_014473721.1 diguanylate cyclase -
  ABLL_RS05145 (ABLL_1011) - 1032831..1033577 (-) 747 WP_014473722.1 choline/ethanolamine kinase family protein -
  ABLL_RS05150 (ABLL_1012) pnuC 1033567..1034139 (-) 573 WP_014473723.1 nicotinamide riboside transporter PnuC -
  ABLL_RS05155 (ABLL_1013) - 1034193..1034669 (-) 477 WP_014473724.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72150.43 Da        Isoelectric Point: 9.2606

>NTDB_id=45368 ABLL_RS05130 WP_014473719.1 1028866..1030716(-) (uvrC) [Arcobacter sp. L]
MNLHEKLKQLPNDSGVYQYFDKDGHLLYIGKAKVLKNRVKSYFKFVPKLQPADKLSPRIYKMISEVEALEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFIDYNEDFPRLEITRKIHKSKNIKYFGPYSTGAKDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCYAPCENKISKDDYAKIVENALEFIYNKTKLISKLNEKMLQYSNDFRFEEAMTLRDRIKTIEKSQI
KTGIDLATNEDIDIFVITTNNKKAVIVRMFLRDGKLTSSSHDFLKIDNFTQEFDFDYEEAYKRAIINYYDNEIPLLPKEI
LVGCELEETKEIEEFLYTRFNKKIKIINPKKDKKKDIVQIAFNNCDELLRLESSKNQTSIYEDLKELFTLQTLPYIIESF
DNSHMMGQATVGAMIVWNETLNSFDKKAFRHYNLESKDEYSQMREMLIRRVESFEKNPAPDLWIIDGGETLLKLAYDIVQ
SVGVNLDIIAIAKEKLDAKAHRAKGAAKDIIHYKNKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIKNASLEELKNVLNEKDANTILNYFIASKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=45368 ABLL_RS05130 WP_014473719.1 1028866..1030716(-) (uvrC) [Arcobacter sp. L]
ATGAATTTACATGAGAAACTAAAACAACTTCCTAATGATTCGGGAGTTTATCAATACTTTGATAAAGATGGTCATTTACT
TTATATTGGAAAAGCAAAAGTTCTAAAAAATAGAGTTAAGTCATATTTTAAATTTGTGCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGCGAAGTTGAAGCTCTTGAGTGGATTGTTGTACCAAATGAACATGATGCA
CTTATTTTAGAAAATTCATTAATCAAGCAATTAAAACCAAAATATAATATTTTACTTCGTGATGATAAAACATATCCATA
TATTTTTATTGATTACAATGAAGATTTTCCAAGACTTGAAATCACAAGAAAAATACATAAAAGCAAAAATATAAAATATT
TTGGACCTTATTCAACAGGTGCAAAAGATATGCTTGATAGCATTTATGAGATTGTTCCATTAGTTCAAAAAAAATCTTGT
GTAAAAGGTAAAAAAGCTTGTCTATTTCATCAAATACAAAAATGTTATGCTCCGTGCGAAAATAAGATTTCAAAAGATGA
TTATGCAAAAATAGTAGAAAATGCCTTAGAATTTATCTATAATAAAACAAAACTCATTTCTAAACTAAATGAAAAAATGC
TTCAATATTCAAATGATTTTAGATTTGAAGAGGCAATGACTTTAAGAGATAGAATCAAAACTATTGAAAAATCACAAATA
AAAACTGGAATTGATTTAGCTACAAATGAAGATATTGATATCTTCGTAATAACTACAAACAATAAAAAAGCAGTAATTGT
ACGAATGTTTTTAAGAGATGGAAAATTAACTTCATCAAGTCATGACTTTTTAAAAATTGATAATTTTACACAAGAATTTG
ATTTTGATTATGAAGAGGCCTATAAAAGAGCTATTATAAACTATTATGACAATGAAATTCCTCTTTTACCAAAAGAGATT
TTAGTTGGATGTGAATTAGAAGAAACAAAAGAGATTGAAGAATTTTTATATACAAGATTTAATAAAAAGATAAAAATTAT
AAATCCTAAAAAAGATAAGAAAAAAGATATTGTTCAAATTGCCTTTAATAACTGTGATGAACTTTTAAGACTAGAATCAT
CAAAAAATCAAACTTCTATTTATGAGGATTTAAAAGAGTTATTTACTCTTCAAACTCTTCCATATATAATTGAAAGTTTC
GATAACTCTCATATGATGGGACAAGCAACTGTTGGAGCTATGATAGTTTGGAATGAAACTTTAAATTCTTTTGATAAAAA
AGCTTTTAGACACTATAATCTTGAATCAAAAGACGAATACTCTCAAATGAGAGAAATGTTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCGGCACCTGATTTATGGATAATAGATGGTGGAGAAACTCTTTTGAAACTGGCATATGACATAGTACAA
TCTGTTGGAGTTAATCTTGATATTATTGCAATTGCAAAAGAAAAACTTGATGCAAAAGCTCACAGAGCAAAAGGTGCAGC
AAAAGATATAATTCATTATAAAAATAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGATTACAAT
TCGTTCAAAGACAAAGGGATGAAGCTCACAGATTTGCTATAACATTCCATAAAAAACAAAAAAGAGCCCAAGATAAACAA
ATTTCTTTATTACAAATCAAAGGAATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAAAT
AAAAAATGCATCTTTAGAAGAATTAAAAAATGTATTAAATGAAAAAGATGCAAATACAATTTTAAATTATTTTATAGCCT
CAAAGGATTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.741

97.89

0.506

Multiple sequence alignment