Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6H73_RS08185 Genome accession   NZ_CP066073
Coordinates   1633817..1634425 (+) Length   202 a.a.
NCBI ID   WP_004230533.1    Uniprot ID   A0ABU0A760
Organism   Streptococcus dysgalactiae strain FDAARGOS_1016     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1628817..1639425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H73_RS08155 (I6H73_08155) - 1629083..1629565 (+) 483 WP_004230535.1 S-ribosylhomocysteine lyase -
  I6H73_RS08160 (I6H73_08160) - 1629679..1631160 (-) 1482 WP_015017303.1 cell division site-positioning protein MapZ family protein -
  I6H73_RS08165 (I6H73_08165) - 1631174..1632328 (-) 1155 WP_003056774.1 class I SAM-dependent RNA methyltransferase -
  I6H73_RS08175 (I6H73_08175) gpsB 1632773..1633099 (-) 327 WP_003060950.1 cell division regulator GpsB -
  I6H73_RS08180 (I6H73_08180) - 1633221..1633736 (-) 516 WP_003056762.1 DUF1273 domain-containing protein -
  I6H73_RS08185 (I6H73_08185) recU 1633817..1634425 (+) 609 WP_004230533.1 Holliday junction resolvase RecU Machinery gene
  I6H73_RS08190 (I6H73_08190) pbp1a 1634412..1636577 (+) 2166 WP_065974329.1 penicillin-binding protein PBP1A -
  I6H73_RS08195 (I6H73_08195) pepC 1636623..1637954 (-) 1332 WP_012767435.1 aminopeptidase C -
  I6H73_RS08200 (I6H73_08200) nadE 1638135..1638959 (-) 825 WP_003055492.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23362.98 Da        Isoelectric Point: 9.9487

>NTDB_id=453678 I6H73_RS08185 WP_004230533.1 1633817..1634425(+) (recU) [Streptococcus dysgalactiae strain FDAARGOS_1016]
MVNYPHNLIRQKAPSVPKQSKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPIQIVKVDYPKRSRAKIIEAYF
RQPSTTDYSGVYKGHYIDFEAKETRQKTAMPMKNFHLHQIEHMAAVVEQNGICFVLLHFSTLKETYYLPARALIAFYQID
KGNKSMPLDYIRKHGFKIVIGAFPQVPYLDIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=453678 I6H73_RS08185 WP_004230533.1 1633817..1634425(+) (recU) [Streptococcus dysgalactiae strain FDAARGOS_1016]
ATGGTCAACTACCCTCATAATCTTATTCGACAAAAAGCACCTTCCGTGCCAAAGCAATCAAAACAAAATAAGGTAGATTT
TGCCAATCGAGGCATGTCTTTTGAAGCGGCTATCAACGCGACAAATGATTATTATTTATCGCGGCAAATTGCTGTTATTC
ATAAAAAACCTACCCCCATCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGTGCGAAAATCATTGAAGCGTACTTT
AGACAACCTTCAACGACAGATTATTCTGGGGTTTACAAGGGGCATTATATTGATTTTGAGGCCAAGGAAACCAGACAAAA
AACAGCCATGCCTATGAAAAATTTTCATCTCCATCAGATTGAGCACATGGCAGCTGTTGTGGAACAAAATGGAATTTGCT
TTGTCTTACTTCACTTTTCAACACTGAAAGAAACCTACTATCTGCCTGCTCGGGCTCTTATTGCTTTTTATCAGATTGAT
AAGGGGAACAAATCAATGCCCCTCGATTATATCAGAAAACATGGCTTTAAGATAGTTATTGGAGCCTTTCCACAAGTCCC
TTATCTAGACATAATAGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5