Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HUF04_RS28755 Genome accession   NZ_CP054581
Coordinates   6019806..6021167 (-) Length   453 a.a.
NCBI ID   WP_017002524.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YTSEY8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6014806..6026167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF04_RS28730 (HUF04_28775) yjiA 6014993..6015997 (-) 1005 WP_003094852.1 GTPase -
  HUF04_RS28735 (HUF04_28780) - 6016057..6016260 (-) 204 WP_003094856.1 YbdD/YjiX family protein -
  HUF04_RS28740 (HUF04_28785) - 6016309..6018336 (-) 2028 WP_152617444.1 carbon starvation CstA family protein -
  HUF04_RS28745 (HUF04_28790) - 6018713..6019219 (-) 507 WP_003094862.1 DUF3015 domain-containing protein -
  HUF04_RS28750 (HUF04_28795) mapZ 6019422..6019799 (+) 378 WP_003094864.1 cyclic di-GMP-binding protein MapZ -
  HUF04_RS28755 (HUF04_28800) radA 6019806..6021167 (-) 1362 WP_017002524.1 DNA repair protein RadA Machinery gene
  HUF04_RS28760 (HUF04_28805) - 6021277..6021711 (+) 435 WP_003104889.1 CopD family protein -
  HUF04_RS28765 (HUF04_28810) - 6021773..6022027 (-) 255 WP_003104887.1 YdcH family protein -
  HUF04_RS28770 (HUF04_28815) - 6022102..6022653 (-) 552 WP_003121338.1 ankyrin repeat domain-containing protein -
  HUF04_RS28775 (HUF04_28820) katB 6022707..6024248 (-) 1542 WP_034040497.1 catalase KatB -
  HUF04_RS28780 (HUF04_28825) - 6024437..6025990 (-) 1554 WP_023096138.1 catalase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48380.78 Da        Isoelectric Point: 6.8357

>NTDB_id=453664 HUF04_RS28755 WP_017002524.1 6019806..6021167(-) (radA) [Pseudomonas aeruginosa strain YTSEY8]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSAELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=453664 HUF04_RS28755 WP_017002524.1 6019806..6021167(-) (radA) [Pseudomonas aeruginosa strain YTSEY8]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGGCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCGCCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACGCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAAACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGCGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAGGGCGAA
TCAGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGATCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGCGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

100

0.486
  radA Streptococcus pneumoniae Rx1

46.288

100

0.468
  radA Streptococcus pneumoniae D39

46.288

100

0.468
  radA Streptococcus pneumoniae R6

46.288

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.288

100

0.468
  radA Streptococcus mitis SK321

46.389

100

0.468
  radA Streptococcus mitis NCTC 12261

46.171

100

0.466