Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HUF04_RS28455 Genome accession   NZ_CP054581
Coordinates   5951252..5951809 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YTSEY8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5946252..5956809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF04_RS28435 (HUF04_28480) pilR 5947528..5948865 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  HUF04_RS28440 (HUF04_28485) thiO 5948911..5950005 (-) 1095 WP_033943424.1 glycine oxidase ThiO -
  HUF04_RS28445 (HUF04_28490) - 5950140..5950649 (+) 510 WP_034037343.1 Tfp pilus assembly protein FimT/FimU -
  HUF04_RS28450 (HUF04_28495) - 5950755..5951261 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  HUF04_RS28455 (HUF04_28500) pilV 5951252..5951809 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HUF04_RS28460 (HUF04_28505) pilW 5951806..5952630 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HUF04_RS28465 (HUF04_28510) pilX 5952627..5953214 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HUF04_RS28470 (HUF04_28515) pilY1 5953226..5956711 (+) 3486 WP_034040518.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=453663 HUF04_RS28455 WP_003119423.1 5951252..5951809(+) (pilV) [Pseudomonas aeruginosa strain YTSEY8]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=453663 HUF04_RS28455 WP_003119423.1 5951252..5951809(+) (pilV) [Pseudomonas aeruginosa strain YTSEY8]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGATTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995