Detailed information    

insolico Bioinformatically predicted

Overview


Name   irvR   Type   Regulator
Locus tag   I6H73_RS03975 Genome accession   NZ_CP066073
Coordinates   770385..771173 (-) Length   262 a.a.
NCBI ID   WP_065355144.1    Uniprot ID   A0ABU0A7P1
Organism   Streptococcus dysgalactiae strain FDAARGOS_1016     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 765385..776173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H73_RS03945 (I6H73_03945) - 766505..767527 (+) 1023 Protein_774 IS30 family transposase -
  I6H73_RS03950 (I6H73_03950) rplU 767775..768089 (+) 315 WP_002985116.1 50S ribosomal protein L21 -
  I6H73_RS03955 (I6H73_03955) - 768101..768427 (+) 327 WP_003053756.1 ribosomal-processing cysteine protease Prp -
  I6H73_RS03960 (I6H73_03960) rpmA 768455..768748 (+) 294 WP_002985110.1 50S ribosomal protein L27 -
  I6H73_RS03965 (I6H73_03965) - 768834..769949 (-) 1116 WP_003053753.1 site-specific integrase -
  I6H73_RS03970 (I6H73_03970) - 770070..770375 (-) 306 WP_046166079.1 membrane protein -
  I6H73_RS03975 (I6H73_03975) irvR 770385..771173 (-) 789 WP_065355144.1 helix-turn-helix transcriptional regulator Regulator
  I6H73_RS03980 (I6H73_03980) - 771546..771704 (+) 159 WP_003056201.1 hypothetical protein -
  I6H73_RS03985 (I6H73_03985) - 771803..772444 (-) 642 WP_001008979.1 hypothetical protein -
  I6H73_RS03990 (I6H73_03990) - 772496..772726 (+) 231 WP_003056175.1 helix-turn-helix transcriptional regulator -
  I6H73_RS03995 (I6H73_03995) - 773170..773436 (+) 267 WP_003056180.1 helix-turn-helix domain-containing protein -
  I6H73_RS04000 (I6H73_04000) - 773451..773591 (+) 141 WP_003056191.1 hypothetical protein -
  I6H73_RS04005 (I6H73_04005) - 773601..773819 (+) 219 WP_003056177.1 hypothetical protein -
  I6H73_RS04010 (I6H73_04010) - 773821..774063 (+) 243 WP_003056170.1 hypothetical protein -
  I6H73_RS04015 (I6H73_04015) - 774047..775366 (+) 1320 WP_037587684.1 AAA family ATPase -

Sequence


Protein


Download         Length: 262 a.a.        Molecular weight: 29803.98 Da        Isoelectric Point: 8.1020

>NTDB_id=453645 I6H73_RS03975 WP_065355144.1 770385..771173(-) (irvR) [Streptococcus dysgalactiae strain FDAARGOS_1016]
MARGRGKITPQEIEALRFFSSKLNDLLDETSTKQVELSKATGIPPSTLTGYVKGTSLPIPGNVQKIADYFGLMKSDIDPR
FAPRKKNHELKIPTSPLVKKITTTVVELNVPRKQKVLDFATEQLKEQKNKITSIEEKLYEYKVYEKLSAGTGYGYFGDGN
YDTVFYDEELDYDFASWVFGDSMEPTYLNGEVVLIKQTGFDYEGGVYAVEWDGQTYIKKVYREKDGLRLVSLNKKYNDKF
APFSEGPRIIGKIVGNFMPKEY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=453645 I6H73_RS03975 WP_065355144.1 770385..771173(-) (irvR) [Streptococcus dysgalactiae strain FDAARGOS_1016]
ATGGCAAGAGGAAGAGGCAAAATAACCCCTCAAGAAATAGAGGCGTTAAGATTCTTTTCGAGCAAACTAAATGATTTGCT
CGATGAAACAAGTACAAAGCAAGTTGAGCTTTCAAAAGCTACAGGAATTCCACCGAGCACTCTTACGGGTTATGTGAAAG
GAACATCTTTACCTATTCCAGGTAACGTTCAAAAAATAGCAGATTACTTTGGATTGATGAAGTCTGATATAGACCCAAGA
TTTGCGCCTCGTAAGAAAAATCACGAACTCAAAATCCCTACTTCTCCACTCGTCAAAAAAATAACCACAACAGTTGTAGA
ATTAAATGTTCCTCGTAAACAAAAAGTTTTAGACTTTGCGACAGAACAATTAAAAGAACAAAAAAATAAGATTACCTCTA
TAGAAGAAAAACTCTACGAGTACAAAGTCTATGAGAAACTTTCAGCTGGTACAGGTTATGGATATTTCGGCGACGGGAAC
TATGATACTGTTTTTTACGACGAAGAATTGGATTACGATTTTGCTTCGTGGGTCTTCGGAGATTCGATGGAACCGACTTA
TCTAAATGGTGAGGTTGTACTTATAAAACAAACTGGCTTTGATTATGAAGGTGGTGTCTATGCCGTAGAATGGGACGGAC
AAACCTATATTAAGAAAGTCTATAGAGAAAAGGATGGCTTGCGCCTTGTATCCTTAAATAAAAAATACAATGACAAGTTT
GCTCCTTTTAGTGAAGGCCCAAGGATTATAGGGAAAATCGTCGGTAACTTTATGCCGAAAGAATATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

34.539

100

0.401