Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | HSZ50_RS06340 | Genome accession | NZ_CP054575 |
| Coordinates | 1272484..1273458 (+) | Length | 324 a.a. |
| NCBI ID | WP_069794677.1 | Uniprot ID | - |
| Organism | Staphylococcus saprophyticus strain UTI-050 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1267484..1278458
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HSZ50_RS06305 (HSZ50_06305) | rpmG | 1267904..1268053 (+) | 150 | WP_002483181.1 | 50S ribosomal protein L33 | - |
| HSZ50_RS06310 (HSZ50_06310) | - | 1268262..1268807 (+) | 546 | WP_011303016.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| HSZ50_RS06315 (HSZ50_06315) | - | 1268819..1270276 (+) | 1458 | WP_069794671.1 | rhomboid family intramembrane serine protease | - |
| HSZ50_RS06320 (HSZ50_06320) | - | 1270260..1270457 (+) | 198 | WP_037538382.1 | YqgQ family protein | - |
| HSZ50_RS06325 (HSZ50_06325) | - | 1270461..1271447 (+) | 987 | WP_011303019.1 | glucokinase | - |
| HSZ50_RS06330 (HSZ50_06330) | - | 1271447..1271773 (+) | 327 | WP_069794674.1 | MTH1187 family thiamine-binding protein | - |
| HSZ50_RS06335 (HSZ50_06335) | - | 1271773..1272396 (+) | 624 | WP_011303020.1 | MBL fold metallo-hydrolase | - |
| HSZ50_RS06340 (HSZ50_06340) | comGA | 1272484..1273458 (+) | 975 | WP_069794677.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| HSZ50_RS06345 (HSZ50_06345) | comGB | 1273430..1274494 (+) | 1065 | WP_069796024.1 | competence type IV pilus assembly protein ComGB | - |
| HSZ50_RS06350 (HSZ50_06350) | comGC | 1274522..1274833 (+) | 312 | WP_011303023.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| HSZ50_RS06355 (HSZ50_06355) | comGD | 1274814..1275269 (+) | 456 | WP_225791589.1 | competence type IV pilus minor pilin ComGD | - |
| HSZ50_RS06360 (HSZ50_06360) | comGF | 1275527..1275970 (+) | 444 | WP_011303025.1 | competence type IV pilus minor pilin ComGF | - |
| HSZ50_RS06365 (HSZ50_06365) | - | 1276174..1276647 (+) | 474 | WP_002483192.1 | shikimate kinase | - |
| HSZ50_RS06370 (HSZ50_06370) | gcvT | 1276831..1277922 (+) | 1092 | WP_011303027.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36636.87 Da Isoelectric Point: 9.7041
>NTDB_id=453603 HSZ50_RS06340 WP_069794677.1 1272484..1273458(+) (comGA) [Staphylococcus saprophyticus strain UTI-050]
MKLLFNNILKKAISTKATDVHFIPSNDKIYIKFRVQDTLAPIESIQQHIYLKLLTYMKYQAGLDVSKHNVAQSGRYTYKF
KQIYFLRISTLPLSLGIESCVIRIVPQYFQKGSDTSNLGTLYKLMNKKQGLILLSGPTGSGKSTLMYQMVMHAKEQLDLN
IITVEDPVEQLVSGITQVSINEKAGINYANTFKAILRCDPDIILIGEIRDAIIAKQVMHASLSGHLVLTTIHANNCKSAL
LRLKEMGLTMQEMKQALLTVLNQRLITTYNNQRKLVYEQLTKAQINHLIDNDYTLPSSFSNLSTQLTQLAKAGVICEETM
ERYI
MKLLFNNILKKAISTKATDVHFIPSNDKIYIKFRVQDTLAPIESIQQHIYLKLLTYMKYQAGLDVSKHNVAQSGRYTYKF
KQIYFLRISTLPLSLGIESCVIRIVPQYFQKGSDTSNLGTLYKLMNKKQGLILLSGPTGSGKSTLMYQMVMHAKEQLDLN
IITVEDPVEQLVSGITQVSINEKAGINYANTFKAILRCDPDIILIGEIRDAIIAKQVMHASLSGHLVLTTIHANNCKSAL
LRLKEMGLTMQEMKQALLTVLNQRLITTYNNQRKLVYEQLTKAQINHLIDNDYTLPSSFSNLSTQLTQLAKAGVICEETM
ERYI
Nucleotide
Download Length: 975 bp
>NTDB_id=453603 HSZ50_RS06340 WP_069794677.1 1272484..1273458(+) (comGA) [Staphylococcus saprophyticus strain UTI-050]
TTGAAACTTTTATTTAATAATATACTTAAAAAAGCGATTAGTACAAAGGCCACTGATGTGCACTTTATTCCTTCAAATGA
CAAAATATATATTAAATTCAGAGTTCAAGATACGCTTGCACCAATTGAATCCATACAGCAACATATTTATTTGAAATTAT
TAACCTATATGAAATATCAAGCTGGTTTAGATGTGTCTAAACATAATGTTGCTCAAAGTGGTAGATATACTTACAAATTC
AAGCAAATTTACTTTTTAAGAATATCCACGCTACCTTTATCTCTGGGAATAGAAAGTTGTGTTATCAGAATTGTTCCACA
GTATTTTCAAAAAGGAAGTGATACAAGTAATTTAGGTACATTATATAAATTAATGAATAAAAAACAGGGGCTTATATTAT
TAAGTGGACCCACTGGTTCCGGAAAAAGCACTTTAATGTATCAAATGGTCATGCATGCAAAAGAGCAGTTAGATTTAAAT
ATCATAACAGTTGAAGATCCAGTGGAGCAGCTAGTATCTGGAATTACACAAGTATCGATTAATGAAAAAGCAGGTATCAA
TTATGCAAATACTTTTAAAGCGATTTTAAGATGTGATCCTGACATTATTTTGATTGGTGAAATTAGAGATGCCATAATAG
CTAAACAAGTAATGCATGCGAGTCTAAGTGGTCATTTAGTATTAACAACAATTCACGCTAATAACTGTAAAAGCGCATTA
TTAAGGCTTAAAGAAATGGGACTAACGATGCAAGAAATGAAACAAGCTTTATTAACCGTTTTAAACCAAAGACTAATTAC
GACTTATAATAATCAAAGAAAACTTGTATATGAACAACTTACTAAAGCACAAATAAATCATTTAATAGACAATGACTATA
CATTACCTAGTTCATTTTCTAATTTGTCTACTCAATTAACTCAATTAGCCAAAGCAGGTGTTATTTGTGAGGAAACTATG
GAGCGCTATATTTAA
TTGAAACTTTTATTTAATAATATACTTAAAAAAGCGATTAGTACAAAGGCCACTGATGTGCACTTTATTCCTTCAAATGA
CAAAATATATATTAAATTCAGAGTTCAAGATACGCTTGCACCAATTGAATCCATACAGCAACATATTTATTTGAAATTAT
TAACCTATATGAAATATCAAGCTGGTTTAGATGTGTCTAAACATAATGTTGCTCAAAGTGGTAGATATACTTACAAATTC
AAGCAAATTTACTTTTTAAGAATATCCACGCTACCTTTATCTCTGGGAATAGAAAGTTGTGTTATCAGAATTGTTCCACA
GTATTTTCAAAAAGGAAGTGATACAAGTAATTTAGGTACATTATATAAATTAATGAATAAAAAACAGGGGCTTATATTAT
TAAGTGGACCCACTGGTTCCGGAAAAAGCACTTTAATGTATCAAATGGTCATGCATGCAAAAGAGCAGTTAGATTTAAAT
ATCATAACAGTTGAAGATCCAGTGGAGCAGCTAGTATCTGGAATTACACAAGTATCGATTAATGAAAAAGCAGGTATCAA
TTATGCAAATACTTTTAAAGCGATTTTAAGATGTGATCCTGACATTATTTTGATTGGTGAAATTAGAGATGCCATAATAG
CTAAACAAGTAATGCATGCGAGTCTAAGTGGTCATTTAGTATTAACAACAATTCACGCTAATAACTGTAAAAGCGCATTA
TTAAGGCTTAAAGAAATGGGACTAACGATGCAAGAAATGAAACAAGCTTTATTAACCGTTTTAAACCAAAGACTAATTAC
GACTTATAATAATCAAAGAAAACTTGTATATGAACAACTTACTAAAGCACAAATAAATCATTTAATAGACAATGACTATA
CATTACCTAGTTCATTTTCTAATTTGTCTACTCAATTAACTCAATTAGCCAAAGCAGGTGTTATTTGTGAGGAAACTATG
GAGCGCTATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
61.728 |
100 |
0.617 |
| comGA | Staphylococcus aureus N315 |
61.728 |
100 |
0.617 |