Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   HSZ50_RS04155 Genome accession   NZ_CP054575
Coordinates   865179..865895 (-) Length   238 a.a.
NCBI ID   WP_069794537.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-050     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 860179..870895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ50_RS04135 (HSZ50_04135) - 861244..861468 (+) 225 WP_002482777.1 sulfurtransferase TusA family protein -
  HSZ50_RS04140 (HSZ50_04140) - 861614..862567 (+) 954 WP_011302725.1 LacI family DNA-binding transcriptional regulator -
  HSZ50_RS04145 (HSZ50_04145) - 862653..864137 (+) 1485 WP_011302726.1 sucrose-6-phosphate hydrolase -
  HSZ50_RS04150 (HSZ50_04150) - 864134..865102 (+) 969 WP_011302727.1 carbohydrate kinase -
  HSZ50_RS04155 (HSZ50_04155) agrA 865179..865895 (-) 717 WP_069794537.1 quorum-sensing response regulator AgrA Regulator
  HSZ50_RS04160 (HSZ50_04160) agrC 865908..867203 (-) 1296 WP_011302728.1 quorum-sensing sensor histidine kinase AgrC -
  HSZ50_RS04165 (HSZ50_04165) agrD 867229..867390 (-) 162 WP_002482783.1 cyclic lactone autoinducer peptide AgrD -
  HSZ50_RS04170 (HSZ50_04170) - 867393..867962 (-) 570 WP_011302729.1 accessory gene regulator AgrB -
  HSZ50_RS04175 (HSZ50_04175) - 868721..869506 (-) 786 WP_011302730.1 carbon-nitrogen family hydrolase -
  HSZ50_RS04180 (HSZ50_04180) - 869677..870300 (-) 624 WP_174605050.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27927.71 Da        Isoelectric Point: 5.0875

>NTDB_id=453592 HSZ50_RS04155 WP_069794537.1 865179..865895(-) (agrA) [Staphylococcus saprophyticus strain UTI-050]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNLNDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELDQLDERFFRCHNSFVVNRHNIDSIDSKSRVVYFKNSEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=453592 HSZ50_RS04155 WP_069794537.1 865179..865895(-) (agrA) [Staphylococcus saprophyticus strain UTI-050]
ATGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAGCACATGGTTTCTATTATTAATAACTACATCATGATTGA
AGAAAAGCCAATGGAAATCGAAGTTGCCACTGCTGATCCTTATGACATCTTAGAACGCTCTAAGAACCTCAATGATATTG
GGTGTTATTTTTTAGATATTCAGCTTGAAGCTGATATTAATGGTATCAAACTTGCTAGTGAGATTCGTAAACATGATCCT
GTAGGTAATATCATCTTTGTTACAAGTCACAGTGAGTTAACTTACCTAACATTTGTCTATAAGGTAGCCGCGATGGATTT
CATTTTTAAAGATGATCCAGATGAATTAAAATCAAGAATTATTGACTGTCTTGAAACTTCAGAATCAAGATTGAAGCTTC
TTTCAAAAGAAAGTAGTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCGATTTATGTCCAATATGATGATGTTATG
TTCTTTGAATCATCTACTAAATCGCATCGATTGATTGCACATCTTGATAATCGTCAAATTGAGTTTTATGGCAATTTAAA
AGAATTAGATCAACTTGATGAGCGATTTTTCAGATGTCATAATAGCTTTGTCGTCAATAGACACAATATAGATTCTATTG
ACTCTAAGTCACGTGTTGTCTATTTTAAAAATAGTGAACATTGCTATGCATCTGTTAGAAATGTCAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.714

100

0.857