Detailed information    

insolico Bioinformatically predicted

Overview


Name   scnK   Type   Regulator
Locus tag   I6H78_RS08145 Genome accession   NZ_CP066059
Coordinates   1659415..1660725 (-) Length   436 a.a.
NCBI ID   WP_198459360.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 1654415..1665725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS08130 (I6H78_08130) - 1657253..1657633 (+) 381 WP_198459359.1 hypothetical protein -
  I6H78_RS08135 (I6H78_08135) - 1657823..1658515 (+) 693 WP_000240120.1 phosphoglycerate mutase -
  I6H78_RS08140 (I6H78_08140) - 1658685..1659089 (+) 405 Protein_1570 transposase -
  I6H78_RS08145 (I6H78_08145) scnK 1659415..1660725 (-) 1311 WP_198459360.1 sensor histidine kinase Regulator
  I6H78_RS08150 (I6H78_08150) scnR 1660726..1661415 (-) 690 WP_001106859.1 response regulator transcription factor Regulator
  I6H78_RS08155 (I6H78_08155) - 1661587..1662495 (+) 909 WP_125841443.1 ABC transporter ATP-binding protein -
  I6H78_RS08160 (I6H78_08160) - 1662495..1663235 (+) 741 WP_008809654.1 ABC transporter permease -
  I6H78_RS08165 (I6H78_08165) - 1663232..1663960 (+) 729 WP_198459361.1 ABC transporter permease -
  I6H78_RS08170 (I6H78_08170) - 1664076..1665198 (-) 1123 Protein_1576 ISL3 family transposase -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 50019.99 Da        Isoelectric Point: 9.2157

>NTDB_id=453493 I6H78_RS08145 WP_198459360.1 1659415..1660725(-) (scnK) [Streptococcus oralis strain FDAARGOS_1021]
MDTVKFFTKLLTRYVLLILALIIGLVFVYGLVFSAYFSFYGKEKPELLYTKIAQSSQENNFNFDKSSKIEMDKQNTWAMV
LNQDGNIVQSYHLPKGLKRHYTNADMVKFSRWYLEDYPVFSYVRGQQILVLGYPKKHSLAKFNFYANTQFIRNFLSLGLV
FLGIILLLIFILLSRSKLRIKKEMEPIITAVTSLSQGQNIVLKEKGNFSEIKTALNETSHILEESNTMKEQWIRGVSHDL
RNPLMLISGYNSQLEQQYGKGKQTEEIENQIQTMKEMISNLNMSYLLDNQKRHSEFSNLDLVAVLRTVIADILNNYETIT
LHFDLPAETVLVKGEVTLLARAFRNLLLNSIMHSGSNQIDLTYQLSDNKVLIVIADQGDITAQKITELNQKSTNYESHGM
GTVITKQIIKLHQGEIVFLDNYPGLKVTISLPLVKE

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=453493 I6H78_RS08145 WP_198459360.1 1659415..1660725(-) (scnK) [Streptococcus oralis strain FDAARGOS_1021]
ATGGATACCGTTAAATTTTTTACTAAGTTATTAACCAGGTATGTTCTATTAATCTTGGCTTTAATCATAGGACTTGTTTT
TGTTTATGGTTTGGTTTTCTCAGCCTATTTTAGTTTCTATGGAAAGGAAAAACCGGAACTACTTTACACTAAAATCGCTC
AATCGAGTCAAGAGAATAATTTCAATTTTGATAAAAGCAGCAAAATTGAAATGGATAAACAAAATACTTGGGCTATGGTA
CTGAATCAAGATGGCAATATTGTCCAATCTTATCATTTACCTAAAGGACTCAAAAGGCATTATACGAATGCTGATATGGT
TAAATTTTCACGTTGGTATTTAGAAGATTACCCTGTTTTCTCCTATGTACGTGGTCAGCAAATTTTAGTTTTGGGCTATC
CTAAAAAGCATTCCTTAGCAAAATTTAATTTCTATGCTAATACGCAATTTATTAGGAATTTTCTCAGTTTGGGACTTGTT
TTCTTGGGTATTATTCTTTTACTTATTTTTATTCTTTTGAGCCGATCAAAGTTGCGTATTAAAAAGGAGATGGAGCCGAT
TATTACTGCTGTCACTTCTTTATCTCAAGGTCAAAATATCGTTCTTAAAGAAAAGGGAAATTTCTCTGAAATTAAGACGG
CTCTCAATGAAACATCTCATATTTTGGAAGAAAGCAACACGATGAAAGAGCAATGGATTAGAGGGGTCAGTCATGATTTA
CGCAATCCTCTTATGCTCATATCAGGTTATAACAGTCAGTTAGAGCAGCAATATGGCAAAGGAAAGCAGACAGAGGAAAT
TGAAAATCAGATTCAAACTATGAAAGAAATGATTTCTAATCTCAATATGAGCTACTTATTGGATAACCAAAAGCGTCACT
CCGAATTTTCCAATCTCGATTTGGTTGCTGTCCTACGAACAGTAATTGCCGATATATTGAATAATTATGAAACAATTACA
CTTCATTTTGATTTGCCTGCCGAGACAGTGTTGGTAAAAGGAGAGGTAACTTTATTAGCAAGAGCTTTTAGAAATCTCTT
GCTTAATAGTATTATGCACAGCGGCTCTAACCAGATTGATCTGACTTATCAATTATCTGATAATAAAGTGCTCATCGTCA
TTGCGGATCAAGGAGATATTACAGCTCAAAAAATTACTGAGCTAAATCAAAAATCAACTAATTATGAATCACATGGTATG
GGAACAGTTATCACCAAACAAATTATTAAATTACATCAAGGTGAAATTGTTTTTTTGGACAATTATCCAGGCTTAAAAGT
CACCATTTCTTTACCTTTAGTAAAGGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

82.11

100

0.821