Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FOC81_RS27320 Genome accession   NZ_CP054569
Coordinates   5857151..5858596 (-) Length   481 a.a.
NCBI ID   WP_174717160.1    Uniprot ID   -
Organism   Achromobacter denitrificans strain FDAARGOS_787     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5852151..5863596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC81_RS27295 (FOC81_27295) - 5853209..5853892 (+) 684 WP_172600274.1 hypothetical protein -
  FOC81_RS27300 (FOC81_27300) bfr 5853972..5854448 (-) 477 WP_062685233.1 bacterioferritin -
  FOC81_RS27305 (FOC81_27305) - 5854814..5855719 (-) 906 WP_376739741.1 DMT family transporter -
  FOC81_RS27310 (FOC81_27310) - 5855858..5856715 (+) 858 WP_062685234.1 LysR substrate-binding domain-containing protein -
  FOC81_RS27315 (FOC81_27315) - 5856748..5857029 (-) 282 WP_062685235.1 (2Fe-2S)-binding protein -
  FOC81_RS27320 (FOC81_27320) rpoN/rpoN1 5857151..5858596 (-) 1446 WP_174717160.1 RNA polymerase factor sigma-54 Machinery gene
  FOC81_RS27325 (FOC81_27325) - 5858595..5859218 (+) 624 WP_062685237.1 hypothetical protein -
  FOC81_RS27330 (FOC81_27330) leuA 5859631..5861343 (+) 1713 WP_174717161.1 2-isopropylmalate synthase -
  FOC81_RS27335 (FOC81_27335) - 5861404..5862732 (-) 1329 WP_174717162.1 amidase -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52684.96 Da        Isoelectric Point: 4.7783

>NTDB_id=453468 FOC81_RS27320 WP_174717160.1 5857151..5858596(-) (rpoN/rpoN1) [Achromobacter denitrificans strain FDAARGOS_787]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLDLEAEISQVLAENPLLERDDEPQSAEEHADSERESSVQDDEP
PLERETPAEEMPGSGGVYPDDDSSLPEAARPDTLREHLLGQLVLTRAEPRDVALAGLLIDELDENGYLGSPLEEILGWLP
AEMEPDLDELKAALSLLQSFDPAGIGARDMAECLLLQLRNPDLSRLPEAADGAVLACARRICAEHLSLLATGNTARLCAA
VGCDEPTFRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQATLNSAAVPRLQINGLYAQMLGNQKESAHAGL
QSQLQQARWMIRNVEQRFDTILRVAQAIVEHQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGTGVSTEGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMQKLADQGIVIARRTVAKYREALRIAPAALRKAQAGA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=453468 FOC81_RS27320 WP_174717160.1 5857151..5858596(-) (rpoN/rpoN1) [Achromobacter denitrificans strain FDAARGOS_787]
ATGCAAAATATTGTACCTATGACCCGTCCAATTTTAGAACTGCGACCTGGTCAGCATTTGACGCTGACGCCACAGCTGCA
GCAATCGATCCGATTGTTGCAGCTGTCCACGCTCGACCTTGAGGCCGAGATTTCGCAGGTGCTCGCGGAAAACCCGTTGC
TGGAACGGGACGACGAGCCCCAGTCGGCCGAGGAGCACGCCGATTCCGAGCGCGAGTCCTCCGTGCAGGACGACGAGCCG
CCCCTCGAACGCGAGACGCCGGCCGAGGAAATGCCCGGGTCCGGCGGCGTGTACCCGGACGACGATTCCTCCCTGCCCGA
GGCGGCGCGGCCGGACACGCTGCGCGAGCATCTGTTGGGCCAGCTGGTGCTGACGCGGGCGGAACCCCGCGACGTGGCCC
TGGCGGGCCTGCTGATCGACGAACTGGACGAGAACGGCTACCTGGGATCGCCGCTGGAGGAGATCCTGGGCTGGCTGCCG
GCCGAAATGGAGCCGGACCTCGACGAACTGAAGGCGGCCCTGTCCCTGCTGCAGTCGTTCGATCCGGCCGGCATCGGCGC
GCGCGACATGGCCGAATGCCTGCTGTTGCAACTGCGCAACCCCGACCTCTCGCGCCTGCCCGAGGCCGCGGACGGCGCGG
TCCTGGCCTGTGCGCGCCGCATCTGCGCCGAGCACCTGTCCCTGCTGGCCACCGGCAATACCGCCCGGCTGTGCGCCGCC
GTGGGCTGCGACGAGCCGACCTTCCGGGCGGCCCATGCCCTGATCCTGCGCCTGGAGCCCCGGCCGGGGCGGGCCTGGAC
CGTGCCCGCCGCAGACTACGCGGTGCCCGACGTCATCGTGCGCAAGACCCGCCGCGGCTGGCAGGCCACGCTGAACAGCG
CCGCCGTGCCCCGGCTTCAGATCAACGGGCTGTATGCCCAGATGCTGGGCAACCAGAAGGAATCCGCGCACGCCGGCCTG
CAGTCGCAGTTGCAGCAGGCCCGCTGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGCGTGGCCCAGGC
CATCGTGGAACACCAGACGGCCTTCTTCAGCCAGGGGCCGGCGGCCATGCGGCCGCTCATCTTGAAGGACATCGCAGGCG
AGCTGGGTTTGCATGAATCCACGATTTCACGGGCCACAACGCAGAAGTACATGCTCACTCCGTTCGGCACACTGGAGCTC
AAGCGCTTCTTCGGCACCGGCGTGTCCACCGAGGGCGGGGACGCCACCTCGGCCACCGCCGTGCAAACGTTCATCCGCCA
GATGGTGGCGGAAGAGAATCGCGCCAAGCCGCTGTCGGACAGCCAGATCATGCAAAAGCTGGCCGATCAGGGGATAGTCA
TCGCCCGCCGGACGGTGGCAAAGTACCGCGAAGCGCTGCGAATCGCCCCGGCCGCGCTGCGCAAGGCGCAGGCCGGCGCC
CGCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.099

100

0.524