Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC81_RS08290 Genome accession   NZ_CP054569
Coordinates   1736575..1737942 (+) Length   455 a.a.
NCBI ID   WP_174716045.1    Uniprot ID   -
Organism   Achromobacter denitrificans strain FDAARGOS_787     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1731575..1742942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC81_RS08270 (FOC81_08270) hpaE 1732584..1734050 (+) 1467 WP_088447540.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -
  FOC81_RS08275 (FOC81_08275) hpaD 1734087..1734938 (+) 852 WP_062683803.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  FOC81_RS08280 (FOC81_08280) hpaR 1734939..1735403 (-) 465 WP_062683804.1 homoprotocatechuate degradation operon regulator HpaR -
  FOC81_RS08285 (FOC81_08285) - 1735510..1736145 (-) 636 WP_062683805.1 hypothetical protein -
  FOC81_RS08290 (FOC81_08290) radA 1736575..1737942 (+) 1368 WP_174716045.1 DNA repair protein RadA Machinery gene
  FOC81_RS08295 (FOC81_08295) - 1738031..1738810 (+) 780 WP_062683807.1 sulfite exporter TauE/SafE family protein -
  FOC81_RS08300 (FOC81_08300) - 1738981..1739214 (+) 234 WP_062683808.1 hypothetical protein -
  FOC81_RS08305 (FOC81_08305) - 1739356..1740318 (-) 963 WP_062683809.1 2-hydroxyacid dehydrogenase -
  FOC81_RS08310 (FOC81_08310) - 1740421..1741404 (-) 984 WP_062683810.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  FOC81_RS08315 (FOC81_08315) - 1741481..1742488 (-) 1008 WP_062683837.1 Bug family tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48325.38 Da        Isoelectric Point: 7.1756

>NTDB_id=453457 FOC81_RS08290 WP_174716045.1 1736575..1737942(+) (radA) [Achromobacter denitrificans strain FDAARGOS_787]
MAKSRTVYVCADCGGTTPKWQGKCPHCNAWNTLEETLESSSSSPAAASHRYAPLASSSPVRSLSEIEARETPRQPTGLDE
FDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSTTTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQ
AAVSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDTSHA
PNPRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPRGLIAFGEVGLA
GEIRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=453457 FOC81_RS08290 WP_174716045.1 1736575..1737942(+) (radA) [Achromobacter denitrificans strain FDAARGOS_787]
ATGGCCAAATCCCGAACCGTATACGTCTGCGCCGATTGCGGCGGCACTACCCCGAAGTGGCAGGGCAAATGCCCCCACTG
CAACGCCTGGAACACGCTGGAAGAAACCCTGGAGTCCTCGTCCTCGTCCCCGGCCGCGGCCTCGCACCGCTACGCGCCGC
TGGCGTCGAGCAGCCCGGTGCGCAGCCTGTCGGAGATCGAGGCCCGCGAAACGCCGCGCCAGCCCACCGGGCTGGACGAG
TTCGATCGCGTGCTGGGCGGCGGCCTGGTGGCCGGCGCCGTCGTGCTGATCGGCGGGGATCCCGGCATCGGCAAATCCAC
GCTGCTGTTGCAGGCGCTGGCGTCCCTGTCGACCACCACCAACGTGCTGTACGTCACGGGCGAGGAATCCGCCGAGCAGG
TGGCGCTGCGCGCGCGGCGCCTGGGCCTGCAGACCGGCAACGTCAACCTGCTGGCCGAAATCCGGCTGGAGGCCATCCAG
GCCGCGGTGTCCGAGCAGAAGCCCACCGTGGCCGTCATCGACTCGATCCAGACGCTCTACAGCGGCGAGCTGACCGCGGC
GCCGGGCTCGGTGTCGCAGGTGCGCGAATGCGCGGCGCAACTCACGCGCCTGGCCAAGCAGACCGGCATCGCCATCGTCA
TGATCGGCCACGTCACCAAGGACGGCGCGCTGGCCGGGCCGCGCGTGCTCGAACACATCGTCGATACCGTGCTGTATTTC
GAAGGGGACACGCATTCCTCGTTCCGCCTGGTGCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGTGTT
CGCGATGACGGACCGGGGGCTGCGCGGCGTGGCCAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGCAGGTGGCCG
GATCCTGCGTCATGGCCACGCAGGAAGGCACCCGTCCGCTGCTGGTGGAAATCCAGGCGCTGGTCGATACCTCGCACGCG
CCCAACCCGCGCCGGCTGACGGTGGGGCTGGAAGGCAACCGGCTGGCGATGCTGCTGGCCGTGCTGCACCGGCATGCGGG
CGTGTCCACCTTCGACCAGGACGTCTTCGTCAACGCGGTGGGCGGCGTGCGCATCACCGAGCCCGCGGCCGACCTGCCGG
TGCTCCTGGCCATCATGTCCTCGTTGCGCGACAAGCCGCTGCCGCGCGGGCTGATCGCGTTCGGCGAAGTGGGCCTGGCC
GGCGAGATCCGGCCCGCGCCGCGCGGCCAGGAGCGCTTGCGCGAAGCGGCCAAGCTGGGCTTTTCGATCGCCCTGATCCC
CAAGGCCAACGCGCCGCGCCAGCCGATCGAGGGGCTGGAGATCTGGGCCGTGGACCGGCTGGACGCCGCGCTGGACAAAC
TGCGTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.781

100

0.499
  radA Streptococcus mitis NCTC 12261

45.934

100

0.459
  radA Streptococcus pneumoniae D39

48.131

94.066

0.453
  radA Streptococcus pneumoniae TIGR4

48.131

94.066

0.453
  radA Streptococcus mitis SK321

48.131

94.066

0.453
  radA Streptococcus pneumoniae R6

48.131

94.066

0.453
  radA Streptococcus pneumoniae Rx1

48.131

94.066

0.453