Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I6H78_RS05215 Genome accession   NZ_CP066059
Coordinates   1074031..1074801 (-) Length   256 a.a.
NCBI ID   WP_198459013.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1069031..1079801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS05180 (I6H78_05180) comA 1069187..1071340 (-) 2154 WP_198459010.1 peptide cleavage/export ABC transporter ComA Regulator
  I6H78_RS05185 (I6H78_05185) - 1071550..1071759 (-) 210 WP_000869801.1 hypothetical protein -
  I6H78_RS05190 (I6H78_05190) - 1071784..1071972 (-) 189 WP_198459011.1 hypothetical protein -
  I6H78_RS05195 (I6H78_05195) - 1071982..1072149 (-) 168 WP_000415691.1 bacteriocin -
  I6H78_RS05200 (I6H78_05200) - 1072167..1072355 (-) 189 WP_084921541.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  I6H78_RS05205 (I6H78_05205) - 1072799..1073035 (-) 237 WP_000136435.1 acyl carrier protein -
  I6H78_RS05210 (I6H78_05210) plsX 1073042..1074034 (-) 993 WP_198459012.1 phosphate acyltransferase PlsX -
  I6H78_RS05215 (I6H78_05215) recO 1074031..1074801 (-) 771 WP_198459013.1 DNA repair protein RecO Machinery gene
  I6H78_RS05220 (I6H78_05220) - 1074798..1075967 (-) 1170 WP_198459014.1 pyridoxal phosphate-dependent aminotransferase -
  I6H78_RS05225 (I6H78_05225) - 1076119..1077129 (+) 1011 WP_198459015.1 YeiH family protein -
  I6H78_RS05230 (I6H78_05230) - 1077158..1077595 (-) 438 WP_198459016.1 CoA-binding protein -
  I6H78_RS05235 (I6H78_05235) - 1077715..1078683 (-) 969 WP_198459017.1 ribose-phosphate diphosphokinase -
  I6H78_RS05240 (I6H78_05240) - 1078897..1079391 (-) 495 WP_007522536.1 beta-class carbonic anhydrase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29749.21 Da        Isoelectric Point: 5.1714

>NTDB_id=453455 I6H78_RS05215 WP_198459013.1 1074031..1074801(-) (recO) [Streptococcus oralis strain FDAARGOS_1021]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLRKTLELMEAGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPDHFHEDEKRCHLNPNIPYLLNQFQAIDFETLETISLKAEIKQDLRKFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=453455 I6H78_RS05215 WP_198459013.1 1074031..1074801(-) (recO) [Streptococcus oralis strain FDAARGOS_1021]
ATGATTCAGTCTATCACGAGTCAAGGTCTCGTACTCTACAATCGTAACTTTCGTGAGGATGACAAGCTAGTCAAGATCTT
TACCGAGCAAGCGGGCAAGCGCATGTTTTTCGTCAAACACGCTGGCCAGTCCAAACTAGCTCCAGTTATTCAGCCCTTGG
TGTTGGCACGATTTCTCTTGCGCATCAATGATGATGGGCTTAGCTACATCGAGGACTACCATGAGGTGATGACCTTCCCC
AAGATTAATAGTGATCTCTTTGTCATGGCCTATGCAACCTATGTGGCTGCTCTTGCAGATGCTAGTTTGCAGGATAATCA
GCAGGATGCTCCCTTGTTTGCTTTCTTGAGGAAGACTCTAGAGTTGATGGAAGCAGGCATAGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGGATCAGCCTTAATTTTAATGAGTGTGTCTTTTGCCATCGGGTGGGT
CAGGCCTTTGACTTTTCTTTTAAATATGGAGCCTGCCTCTGTCCGGATCATTTTCATGAGGACGAGAAACGTTGCCATCT
GAATCCCAACATCCCTTATCTGCTCAATCAATTTCAAGCCATTGATTTTGAAACCTTGGAGACGATTTCGCTTAAGGCCG
AAATCAAGCAAGACTTGCGCAAGTTCATGGATCAACTCTACGAAGAGTATGTTGGGATTCACCTAAAATCAAAGAAATTC
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAGACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

95.312

100

0.953