Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   I6H78_RS04425 Genome accession   NZ_CP066059
Coordinates   922536..924512 (-) Length   658 a.a.
NCBI ID   WP_198460188.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 917536..929512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS04405 (I6H78_04405) adhE 918260..920911 (-) 2652 WP_084944770.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  I6H78_RS04410 (I6H78_04410) - 921207..921620 (-) 414 WP_198460186.1 MORN repeat-containing protein -
  I6H78_RS04415 (I6H78_04415) - 921607..922050 (-) 444 WP_198460187.1 low molecular weight protein-tyrosine-phosphatase -
  I6H78_RS04420 (I6H78_04420) yajC 922098..922418 (-) 321 WP_049501161.1 preprotein translocase subunit YajC -
  I6H78_RS04425 (I6H78_04425) recP/tkt 922536..924512 (-) 1977 WP_198460188.1 transketolase Machinery gene
  I6H78_RS04430 (I6H78_04430) - 924631..925254 (-) 624 WP_198460189.1 ribonuclease P -
  I6H78_RS04435 (I6H78_04435) jag 925310..926296 (-) 987 WP_042768792.1 RNA-binding cell elongation regulator Jag/EloR -
  I6H78_RS04440 (I6H78_04440) - 926311..927138 (-) 828 WP_162837252.1 membrane protein insertase YidC -
  I6H78_RS04445 (I6H78_04445) rnpA 927113..927484 (-) 372 WP_000748120.1 ribonuclease P protein component -
  I6H78_RS04450 (I6H78_04450) - 927634..928824 (-) 1191 WP_198460190.1 acetate kinase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 70886.47 Da        Isoelectric Point: 4.7232

>NTDB_id=453441 I6H78_RS04425 WP_198460188.1 922536..924512(-) (recP/tkt) [Streptococcus oralis strain FDAARGOS_1021]
MSNLSVNAIRFLGIDAINKANSGHPGVVMGAAPMAYSLFTKQLRINPAQPNWINRDRFILSAGHGSMLLYALLHLSGFED
VSMDEVKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNREGFNIFDHYTYVICGDGDLMEG
VSSEAASYAGLQKLDKLVVLYDSNDINLDGETKDSFTENVRDRYNAYGWHTALVEDGTDLEAIHAAIETAKASGKPSLIE
VKTVIGYGSPNKQGTNAVHGAPLGADETAATRQALGWDYEPFEIPAEVYADFKENVADRGASAYQAWTKLVADYKEAHPE
LAAEVEAIIDGRDPVEVTPADFPALENGFSQATRNSSQDALNVVAAKLPTFLGGSADLAHSNMTYIKTDGLQDDANRLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPVEHLAGLR
AMPNLNVFRPADARETQAAWYLAVASEKTPTALVLTRQNLTVEEGTDFDKVAKGAYVVYENATDFDTILIATGSEVNLAV
AAAKELASQGAKVRVVSMPSTDVFDAQDAAYKEEILPNAVRRRVAVEMGATQNWYKYVGLDGAVLGIDTFGASAPAPKVL
AEYGFTVENLVKVVQNLK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=453441 I6H78_RS04425 WP_198460188.1 922536..924512(-) (recP/tkt) [Streptococcus oralis strain FDAARGOS_1021]
ATGTCAAATCTATCTGTTAATGCAATTCGTTTTCTAGGTATTGACGCCATCAACAAAGCAAACTCAGGTCACCCAGGGGT
GGTTATGGGGGCTGCTCCTATGGCCTATAGCCTCTTTACAAAGCAACTTCGTATCAATCCAGCTCAACCAAACTGGATCA
ACCGCGACCGTTTTATTCTTTCAGCAGGTCATGGCTCTATGCTTCTTTATGCCCTTCTTCACCTTTCTGGTTTTGAAGAT
GTTAGCATGGATGAAGTCAAGAACTTCCGCCAATGGGGTTCGAAAACACCAGGCCACCCAGAATTTGGGCATACTGCAGG
GGTTGACGCTACTACTGGACCTCTAGGACAAGGGATTTCTACTGCTACTGGTTTTGCCCAAGCAGAACGTTTCTTGGCAG
CCAAATATAATCGCGAAGGCTTCAATATCTTTGACCACTATACTTATGTGATCTGTGGCGACGGAGATTTGATGGAAGGT
GTTTCAAGCGAGGCAGCTTCATACGCAGGTTTGCAAAAACTCGACAAGTTGGTTGTTCTTTATGATTCAAATGACATTAA
CTTGGATGGTGAGACAAAAGATTCCTTCACAGAAAATGTTCGTGACCGTTACAATGCCTACGGTTGGCACACAGCCTTGG
TTGAAGATGGGACAGACTTGGAAGCGATCCATGCTGCTATTGAAACAGCTAAAGCTTCAGGAAAACCATCTTTGATTGAA
GTGAAGACTGTTATTGGATACGGTTCTCCAAACAAACAAGGAACTAATGCTGTACACGGTGCTCCTCTTGGAGCAGATGA
AACTGCAGCAACTCGCCAAGCGCTCGGTTGGGATTATGAACCATTTGAAATCCCAGCTGAAGTTTATGCTGATTTCAAAG
AAAATGTTGCAGACCGTGGTGCATCAGCTTATCAAGCTTGGACAAAATTAGTTGCTGACTATAAAGAGGCTCATCCAGAA
CTGGCTGCAGAAGTAGAAGCCATTATCGACGGCCGTGACCCAGTTGAGGTGACTCCAGCAGACTTCCCAGCCTTAGAAAA
TGGTTTCTCTCAAGCAACTCGTAATTCAAGTCAAGATGCTTTGAACGTTGTCGCTGCTAAATTGCCAACTTTCTTAGGTG
GATCAGCTGACCTTGCTCACTCAAACATGACTTATATCAAAACGGACGGACTTCAAGACGACGCTAATCGCTTGAACCGC
AACATTCAGTTTGGTGTTCGTGAATTTGCAATGGGAACGATCTTGAACGGGATGGCCCTTCACGGTGGACTTCGTGTATA
CGGTGGTACTTTCTTCGTCTTCTCTGACTATGTGAAAGCTGCTGTCCGCTTGTCAGCCTTGCAAGGACTTCCTGTGACTT
ATGTCTTTACTCACGATTCAATCGCAGTTGGTGAAGATGGTCCAACGCACGAACCAGTTGAACACTTAGCAGGTCTCCGT
GCTATGCCAAATCTGAATGTTTTCCGCCCAGCAGATGCGCGTGAAACTCAAGCGGCTTGGTACCTTGCCGTGGCAAGCGA
AAAAACACCAACTGCTCTTGTCTTGACACGTCAAAACTTGACTGTTGAAGAAGGGACAGACTTTGACAAAGTTGCGAAAG
GTGCCTATGTTGTCTATGAAAATGCAACAGACTTTGATACGATCTTGATTGCAACAGGTTCAGAGGTCAATCTCGCTGTC
GCAGCTGCCAAAGAATTGGCTAGCCAAGGTGCAAAAGTCCGTGTAGTCAGCATGCCATCAACAGATGTCTTTGACGCACA
AGATGCAGCTTACAAGGAAGAAATCCTTCCAAATGCAGTCCGTCGTCGTGTTGCGGTCGAAATGGGAGCAACTCAAAACT
GGTACAAGTATGTTGGTCTTGATGGTGCAGTTCTCGGTATTGATACCTTTGGAGCATCTGCCCCAGCACCAAAAGTATTG
GCAGAGTACGGATTTACGGTAGAAAATCTTGTAAAAGTCGTTCAAAACTTGAAATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, C-terminal domain (Transketolase_C)

(544-649)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

80.974

99.848

0.809