Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FOC85_RS12970 Genome accession   NZ_CP054568
Coordinates   2459030..2459314 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain FDAARGOS_791     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2454030..2464314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC85_RS12935 (FOC85_12940) tmk 2454184..2454810 (+) 627 WP_000677233.1 dTMP kinase -
  FOC85_RS12940 (FOC85_12945) holB 2454846..2455829 (+) 984 WP_000169577.1 DNA polymerase III subunit delta' -
  FOC85_RS12945 (FOC85_12950) - 2455835..2456662 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  FOC85_RS12950 (FOC85_12955) yabA 2456677..2457027 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  FOC85_RS12955 (FOC85_12960) - 2457148..2457888 (+) 741 WP_001055350.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FOC85_RS12960 (FOC85_12965) - 2457875..2458165 (+) 291 WP_000414341.1 GIY-YIG nuclease family protein -
  FOC85_RS12965 (FOC85_12970) rsmI 2458134..2459009 (+) 876 WP_000267810.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FOC85_RS12970 (FOC85_12975) abrB 2459030..2459314 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FOC85_RS12975 (FOC85_12980) metG 2459805..2461787 (+) 1983 WP_000134150.1 methionine--tRNA ligase -
  FOC85_RS12980 (FOC85_12985) - 2461953..2462720 (+) 768 WP_000895819.1 TatD family hydrolase -
  FOC85_RS12985 (FOC85_12990) rnmV 2462935..2463492 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=453431 FOC85_RS12970 WP_000843036.1 2459030..2459314(-) (abrB) [Bacillus thuringiensis strain FDAARGOS_791]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=453431 FOC85_RS12970 WP_000843036.1 2459030..2459314(-) (abrB) [Bacillus thuringiensis strain FDAARGOS_791]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851