Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6H78_RS03735 Genome accession   NZ_CP066059
Coordinates   774885..775481 (+) Length   198 a.a.
NCBI ID   WP_198460117.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 769885..780481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS03710 (I6H78_03710) mapZ 770794..772236 (-) 1443 WP_198460115.1 cell division site-positioning protein MapZ -
  I6H78_RS03715 (I6H78_03715) - 772249..773406 (-) 1158 WP_198460116.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  I6H78_RS03725 (I6H78_03725) gpsB 773892..774221 (-) 330 WP_007518509.1 cell division regulator GpsB -
  I6H78_RS03730 (I6H78_03730) - 774291..774818 (-) 528 WP_000199581.1 DUF1273 domain-containing protein -
  I6H78_RS03735 (I6H78_03735) recU 774885..775481 (+) 597 WP_198460117.1 Holliday junction resolvase RecU Machinery gene
  I6H78_RS03740 (I6H78_03740) pbp1a 775478..777646 (+) 2169 WP_198460118.1 penicillin-binding protein PBP1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23091.50 Da        Isoelectric Point: 9.8088

>NTDB_id=453427 I6H78_RS03735 WP_198460117.1 774885..775481(+) (recU) [Streptococcus oralis strain FDAARGOS_1021]
MVNYPHKISSQKRQAPLTQTKNFANRGMSFEKMINATNDYYLSHGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYDGYYIDFEAKETRQKHAIPMKNFHLHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAIDLIRFYHQDKGQK
SMPLGYIRENGYRIEPGAFPQIPYLDIIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=453427 I6H78_RS03735 WP_198460117.1 774885..775481(+) (recU) [Streptococcus oralis strain FDAARGOS_1021]
ATGGTCAACTATCCACATAAAATTTCATCTCAAAAGAGGCAAGCACCCCTGACACAAACTAAAAATTTCGCAAATCGGGG
AATGTCTTTTGAAAAGATGATCAATGCTACGAACGACTACTATTTGTCGCATGGGTTAGCTGTTATTCACAAGAAACCGA
CTCCCATCCAAATCGTACGTGTCGACTATCCCCAACGAAGTCGTGCCAAGATTGTTGAAGCCTACTTTAGACAAGCTTCA
ACTACTGACTATTCAGGGGTTTATGATGGATACTACATCGACTTTGAAGCAAAGGAAACCAGGCAAAAACATGCGATTCC
GATGAAGAATTTTCATCTCCATCAGATCCAGCATATGGAACAAGTCCTTGCCCAGCAAGGAATCTGCTTTGTACTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCTATTGACCTCATCCGTTTCTATCATCAAGATAAGGGACAGAAG
TCAATGCCACTTGGATATATTCGAGAAAATGGATATCGGATTGAGCCTGGTGCCTTTCCTCAAATTCCCTACCTCGACAT
TATCAAAGAACATTTACTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49