Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   I6H78_RS00655 Genome accession   NZ_CP066059
Coordinates   139907..140977 (-) Length   356 a.a.
NCBI ID   WP_198459609.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 134907..145977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS00640 (I6H78_00640) - 135855..136898 (+) 1044 WP_198459607.1 dihydrolipoamide acetyltransferase -
  I6H78_RS00645 (I6H78_00645) lpdA 136944..138647 (+) 1704 WP_269780145.1 dihydrolipoyl dehydrogenase -
  I6H78_RS00650 (I6H78_00650) - 138844..139833 (+) 990 WP_198459608.1 lipoate--protein ligase -
  I6H78_RS00655 (I6H78_00655) xerS 139907..140977 (-) 1071 WP_198459609.1 tyrosine recombinase XerS Machinery gene
  I6H78_RS00660 (I6H78_00660) - 141155..141592 (-) 438 WP_198459610.1 MepB family protein -
  I6H78_RS00665 (I6H78_00665) - 141658..142398 (-) 741 WP_198459611.1 CPBP family intramembrane glutamic endopeptidase -
  I6H78_RS00670 (I6H78_00670) - 142447..143997 (-) 1551 WP_198459612.1 ClC family H(+)/Cl(-) exchange transporter -
  I6H78_RS00675 (I6H78_00675) - 144010..144789 (-) 780 WP_198459613.1 ribonuclease HII -
  I6H78_RS00680 (I6H78_00680) ylqF 144776..145627 (-) 852 WP_000201310.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41270.32 Da        Isoelectric Point: 9.6076

>NTDB_id=453399 I6H78_RS00655 WP_198459609.1 139907..140977(-) (xerS) [Streptococcus oralis strain FDAARGOS_1021]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKMSDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTRKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=453399 I6H78_RS00655 WP_198459609.1 139907..140977(-) (xerS) [Streptococcus oralis strain FDAARGOS_1021]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTCTTGGAATACTACCAATC
AAAGCTTGCTGTTCCCTACAGTTTTACAACCTTGTACGAATACCTCAAGGAATACGATCGATTTTTTAGCTGGGTTTTGG
AGTCTGGTATTTCAAATGCTGATAAAATGTCTGACATTCCTTTATCGGTCTTGGAAAATATGTCTAAAAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCATTGCTGAATGCTAATACAACCAAGCAAGGTGTCTCTCAGACGACCATCAA
TCGGACCTTGTCAGCACTTTCCAGTCTTTACAAGTATCTGACCGAGGAGGTTGAAAACGACCAGGGGGAGCCTTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACCAGGAAAAAGAAAGAAACTCTTGCTGCCAGAGCTGAAAACATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACCTATATCGACCAGGAGTACCCACAACAGCTCTCAAATCGCGCTCT
TTCATCATTTAACAAAAATAAAGAACGTGATTTGGCCATCATCGCCCTTCTCCTAGCATCTGGTGTCCGCCTATCTGAAG
CTGTTAATCTGGATCTAAGAGATCTCAATTTAAAAATGATGGTCATTGATGTCACTCGAAAAGGTGGTAAACGTGACTCG
GTCAATGTCGCTGCCTTTGCAAAACCTTATCTAGAGAATTATCTAGCCATTCGAAATCAACGCTATAAGACGGAAAAGAC
GGATACAGCTCTCTTTCTGACCTTATATCGTGGCGTTCCCAATCGTATCGATGCTTCCAGCGTTGAGAAAATGGTTGCTA
AGTACTCTGAGGACTTCAAAGTGCGTGTAACTCCCCATAAACTGCGTCATACCCTAGCAACTAGGCTCTATGATGCAACT
AAATCGCAAGTGTTGGTTAGCCACCAGCTAGGACACGCCAGTACACAAGTCACTGACCTCTATACTCATATCGTCAACGA
TGAACAAAAGAATGCTCTGGACAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(68-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.596

100

0.986