Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   I6H72_RS08280 Genome accession   NZ_CP066055
Coordinates   1647438..1647896 (+) Length   152 a.a.
NCBI ID   WP_003070542.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642438..1652896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS08265 (I6H72_08265) scrK 1644438..1645337 (+) 900 WP_003074417.1 fructokinase ScrK -
  I6H72_RS08270 (I6H72_08270) - 1645403..1645813 (+) 411 WP_119056604.1 peptide deformylase -
  I6H72_RS08275 (I6H72_08275) - 1646080..1647267 (+) 1188 WP_198457828.1 NADH-dependent flavin oxidoreductase -
  I6H72_RS08280 (I6H72_08280) rcrR 1647438..1647896 (+) 459 WP_003070542.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  I6H72_RS08285 (I6H72_08285) rcrP 1647889..1649655 (+) 1767 WP_198457829.1 ABC transporter ATP-binding protein Regulator
  I6H72_RS08290 (I6H72_08290) rcrQ 1649645..1651405 (+) 1761 WP_020998020.1 ABC transporter ATP-binding protein Regulator
  I6H72_RS08295 (I6H72_08295) - 1651615..1651929 (+) 315 WP_021002020.1 PTS cellobiose transporter subunit IIB -
  I6H72_RS08300 (I6H72_08300) - 1651940..1652260 (+) 321 WP_003031767.1 PTS cellobiose transporter subunit IIA -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17751.72 Da        Isoelectric Point: 9.0653

>NTDB_id=453374 I6H72_RS08280 WP_003070542.1 1647438..1647896(+) (rcrR) [Streptococcus constellatus strain FDAARGOS_1015]
MEKPLLEFKRFGRKTHLMIQKIAKERGIEFMAGPQGQVLHFVNHREDCGKMTFIKDIEQELGITKSVASNLMKRMVKNGL
IYLEVSEADKRAKIIRLTSESKERMNKIRDFFDEMDRCLLTGISEEDLVTFFQIMGRFYQNIEKLEKGEANG

Nucleotide


Download         Length: 459 bp        

>NTDB_id=453374 I6H72_RS08280 WP_003070542.1 1647438..1647896(+) (rcrR) [Streptococcus constellatus strain FDAARGOS_1015]
ATGGAAAAACCATTATTGGAATTCAAGCGATTTGGACGGAAGACACATCTGATGATTCAAAAAATTGCCAAAGAGCGAGG
GATTGAATTTATGGCGGGTCCACAAGGGCAAGTATTGCATTTTGTGAATCATCGAGAAGATTGTGGCAAGATGACCTTTA
TTAAAGATATTGAGCAGGAGTTGGGAATTACCAAGTCAGTTGCTAGTAATTTAATGAAGCGAATGGTTAAAAATGGCTTG
ATTTATCTGGAAGTGAGTGAAGCAGATAAACGCGCTAAGATTATTCGTTTGACATCGGAATCAAAAGAGCGCATGAATAA
AATTCGGGATTTCTTTGATGAGATGGATCGCTGCTTATTGACTGGCATTTCAGAAGAAGATTTGGTGACTTTTTTTCAAA
TAATGGGGCGATTTTATCAGAATATTGAAAAATTAGAAAAAGGAGAAGCGAATGGTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.466

96.053

0.408