Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPAKL86_RS03885 Genome accession   NC_019563
Coordinates   784110..785630 (+) Length   506 a.a.
NCBI ID   WP_015087138.1    Uniprot ID   -
Organism   Helicobacter pylori Aklavik86     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 779110..790630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL86_RS03855 (HPAKL86_03770) ribA 779128..779706 (+) 579 WP_015087132.1 GTP cyclohydrolase II -
  HPAKL86_RS03860 (HPAKL86_03775) - 779858..780640 (+) 783 WP_015087133.1 HpaA family protein -
  HPAKL86_RS03865 (HPAKL86_03780) - 780672..781505 (+) 834 WP_015087134.1 outer membrane protein -
  HPAKL86_RS03870 (HPAKL86_03785) tig 781612..782967 (+) 1356 WP_015087135.1 trigger factor -
  HPAKL86_RS03875 (HPAKL86_03790) clpP 782988..783575 (+) 588 WP_015087136.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPAKL86_RS03880 (HPAKL86_03795) def 783580..784107 (+) 528 WP_015087137.1 peptide deformylase -
  HPAKL86_RS03885 (HPAKL86_03800) comM 784110..785630 (+) 1521 WP_015087138.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPAKL86_RS03890 (HPAKL86_03805) - 785655..787715 (+) 2061 WP_015087139.1 heavy metal translocating P-type ATPase -
  HPAKL86_RS03895 (HPAKL86_03810) - 787750..788967 (+) 1218 WP_015087140.1 DNA cytosine methyltransferase -
  HPAKL86_RS03900 (HPAKL86_03815) - 788954..789706 (+) 753 WP_015087141.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57179.18 Da        Isoelectric Point: 8.3918

>NTDB_id=45337 HPAKL86_RS03885 WP_015087138.1 784110..785630(+) (comM) [Helicobacter pylori Aklavik86]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSTTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=45337 HPAKL86_RS03885 WP_015087138.1 784110..785630(+) (comM) [Helicobacter pylori Aklavik86]
ATGATTAACACGATATTTTGCGCAACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGATTGGCTAATAGCTCTATCCAAGAAGCCAGGCAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCACCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGTCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAACCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGTATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGGTTTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCACAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTAGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.431

100

0.974
  comM Acinetobacter baylyi ADP1

36.008

100

0.364

Multiple sequence alignment