Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I6H72_RS06140 Genome accession   NZ_CP066055
Coordinates   1237418..1238191 (-) Length   257 a.a.
NCBI ID   WP_037596262.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1232418..1243191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS06125 (I6H72_06125) purC 1235315..1236022 (-) 708 WP_198457695.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  I6H72_RS06130 (I6H72_06130) - 1236181..1236426 (-) 246 WP_003071282.1 acyl carrier protein -
  I6H72_RS06135 (I6H72_06135) plsX 1236423..1237421 (-) 999 WP_198457696.1 phosphate acyltransferase PlsX -
  I6H72_RS06140 (I6H72_06140) recO 1237418..1238191 (-) 774 WP_037596262.1 DNA repair protein RecO Machinery gene
  I6H72_RS06145 (I6H72_06145) - 1238169..1239356 (-) 1188 WP_198457697.1 pyridoxal phosphate-dependent aminotransferase -
  I6H72_RS06150 (I6H72_06150) - 1239580..1240551 (-) 972 WP_198457698.1 ribose-phosphate diphosphokinase -
  I6H72_RS06155 (I6H72_06155) pcsB 1240692..1241903 (-) 1212 WP_198457699.1 peptidoglycan hydrolase PcsB -
  I6H72_RS06160 (I6H72_06160) mreD 1242013..1242513 (-) 501 WP_003071293.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30017.44 Da        Isoelectric Point: 5.6080

>NTDB_id=453338 I6H72_RS06140 WP_037596262.1 1237418..1238191(-) (recO) [Streptococcus constellatus strain FDAARGOS_1015]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVIQPLVVADFLMKINDDGLSYIDDYQEIRTFQ
HINHDLFTMAYATYVVALADASIQDNEIDSALFVFLQKTLELMEQGLDYEVLTNIFEIQILSRFGVSLNFHECCFCHQIG
LPFDFSFTYSGVLCPEHYDKDERRSHLEPNIPYLLDQFQAVQFSELETISLKSELKKQLRKVIDQIYEEYVGIHLKSKKF
IDSLGDWGEILKNKESK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=453338 I6H72_RS06140 WP_037596262.1 1237418..1238191(-) (recO) [Streptococcus constellatus strain FDAARGOS_1015]
ATGCTGAAATCTATCACAAGTAAAGGTTTGGTTCTCTATAATCGTAATTTCCGAGAAAATGATAAGTTGGTCAAAATTTT
CACAGAGCAAGCGGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCGGTTATTCAACCACTAG
TAGTGGCAGATTTTTTGATGAAAATAAATGATGACGGTTTAAGTTATATTGATGATTATCAAGAAATTAGAACTTTTCAG
CATATCAATCATGATCTTTTTACAATGGCTTATGCGACTTATGTGGTAGCTCTGGCAGATGCCAGTATTCAGGATAATGA
AATAGATTCTGCTCTCTTTGTTTTTTTGCAAAAAACATTAGAATTGATGGAGCAAGGTTTGGACTATGAAGTCTTGACAA
ATATTTTTGAAATTCAAATTTTATCGCGTTTTGGTGTTTCTTTGAATTTTCATGAGTGTTGTTTTTGCCACCAAATAGGG
CTACCGTTTGATTTTTCTTTTACTTATAGTGGCGTTTTATGTCCGGAGCATTACGACAAGGACGAGCGACGGAGTCATTT
GGAGCCCAATATTCCTTACTTATTAGACCAATTTCAGGCTGTTCAATTTAGTGAACTGGAGACAATTTCTTTGAAATCTG
AATTGAAAAAACAATTGCGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAGTCCAAAAAATTT
ATTGATTCTCTGGGAGACTGGGGAGAAATCTTAAAGAACAAGGAGTCGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

74.51

99.222

0.739