Detailed information    

insolico Bioinformatically predicted

Overview


Name   lytF   Type   Regulator
Locus tag   I6H72_RS06085 Genome accession   NZ_CP066055
Coordinates   1223254..1225182 (+) Length   642 a.a.
NCBI ID   WP_198457691.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context


Location: 1218254..1230182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS06055 (I6H72_06055) - 1218361..1219110 (-) 750 WP_022525721.1 hypothetical protein -
  I6H72_RS06060 (I6H72_06060) - 1219115..1219342 (-) 228 WP_006269208.1 hypothetical protein -
  I6H72_RS06065 (I6H72_06065) - 1219358..1220020 (-) 663 WP_198457688.1 hypothetical protein -
  I6H72_RS06070 (I6H72_06070) purK 1220020..1221111 (-) 1092 WP_115262741.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  I6H72_RS06075 (I6H72_06075) purE 1221098..1221589 (-) 492 WP_198457689.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  I6H72_RS06080 (I6H72_06080) purD 1221790..1223058 (-) 1269 WP_198457690.1 phosphoribosylamine--glycine ligase -
  I6H72_RS06085 (I6H72_06085) lytF 1223254..1225182 (+) 1929 WP_198457691.1 GBS Bsp-like repeat-containing protein Regulator
  I6H72_RS06090 (I6H72_06090) purH 1225238..1226785 (-) 1548 WP_048800324.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  I6H72_RS06095 (I6H72_06095) - 1226827..1227534 (-) 708 WP_048800325.1 suppressor of fused domain protein -
  I6H72_RS06100 (I6H72_06100) purN 1227641..1228195 (-) 555 WP_048800326.1 phosphoribosylglycinamide formyltransferase -
  I6H72_RS06105 (I6H72_06105) purM 1228195..1229217 (-) 1023 WP_119056877.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence


Protein


Download         Length: 642 a.a.        Molecular weight: 71326.00 Da        Isoelectric Point: 8.7315

>NTDB_id=453337 I6H72_RS06085 WP_198457691.1 1223254..1225182(+) (lytF) [Streptococcus constellatus strain FDAARGOS_1015]
MKKYSQLFLLSSALLSVFSAQLTVQASEANNASKNSNPTTLASDVTVNVSGNSVSINYIRSQAQNPYTISHAVWSDENGQ
DDLKWYSASQTSTTVDLSQHSGYGTFHVHTYININGKMIGLNGTTFKVEKPANSTVSTVFGKNAQISFTRNKDQTNANIL
HAVWSDEKGQDDIKWYTAGQHKTEIDLSNHRGYGIYHVHTYENKNGKMIGLNGTTFNLEKPNPTIQTSFPEPGIMDIRIK
NVPETIYKLTVPTWSDKNGQDDLQWYAATKNPDGSYNVRVELKKHNYDTGTYHIHLYGESYVKPEFTGLAGTTVQVRSDQ
LPSEEEQKPLFSVENINQEQGTYTIKIKETSKSKSIQSVRVPIWSTTNQSNIKWYTATDNGDGTFSTTFNIRNHQALSGT
YINHIYVKYKDGSEHSYATDSVSMSAEQIKTKVAVTKRSIYNYEVTVTDAYGDGNIILPTWSEVNGQDDIQWYTATKTGN
GIYKFTIDTQKHTGSGLFHTHVYRNLNGQMIGLTGTSYQVEKPVISFQPNYAAATTYPKGQCTWGAKALAPWAGNYWGNG
GDWATSARRAGFKTGTTPQVGAIICWTDGSYGHVGVVTHVASNTRIQIQEANYAGKQYIGNFRGWFNPHAAGQGVVSYIY
PK

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=453337 I6H72_RS06085 WP_198457691.1 1223254..1225182(+) (lytF) [Streptococcus constellatus strain FDAARGOS_1015]
ATGAAAAAATATAGTCAATTGTTTTTACTATCCAGCGCCCTTTTGAGTGTTTTTTCAGCTCAACTAACAGTTCAAGCCTC
GGAAGCAAATAATGCTTCAAAAAACTCAAATCCAACAACTCTTGCTAGCGATGTTACTGTCAATGTTTCTGGCAATAGCG
TTTCTATCAACTACATACGTTCACAAGCCCAAAACCCCTACACCATTTCCCATGCTGTTTGGTCTGATGAAAATGGGCAA
GATGACCTTAAATGGTATTCCGCATCTCAAACATCAACAACTGTTGATTTGAGCCAACATTCTGGGTACGGTACTTTCCA
TGTCCATACATATATCAACATCAATGGAAAAATGATCGGTTTAAATGGAACGACTTTCAAAGTGGAAAAACCCGCTAATA
GCACGGTTTCTACAGTTTTTGGAAAGAATGCTCAAATATCCTTCACTCGAAACAAGGATCAAACCAATGCTAATATTTTA
CACGCTGTTTGGTCTGACGAAAAAGGGCAAGATGACATCAAGTGGTATACAGCAGGTCAACATAAGACAGAAATTGACTT
ATCTAATCATAGAGGCTATGGCATTTACCATGTTCATACTTATGAAAATAAAAACGGAAAAATGATTGGTTTAAACGGTA
CCACTTTTAACCTTGAAAAACCAAATCCTACTATTCAAACTAGTTTTCCAGAACCTGGTATTATGGATATTCGGATAAAA
AATGTCCCTGAAACAATCTATAAACTAACTGTTCCAACTTGGTCTGATAAAAACGGACAAGATGATCTTCAATGGTATGC
AGCTACTAAAAATCCTGATGGAAGCTACAATGTTAGAGTTGAGCTAAAAAAACACAACTATGACACAGGAACTTATCACA
TTCATCTTTACGGAGAAAGCTATGTCAAACCAGAGTTTACTGGCTTAGCTGGAACTACGGTACAAGTTCGTTCCGATCAA
TTACCTTCGGAAGAAGAGCAAAAGCCATTATTCTCTGTTGAAAATATCAATCAAGAACAAGGAACATATACGATCAAAAT
TAAGGAAACTTCAAAATCCAAATCCATTCAATCCGTTCGCGTTCCTATTTGGAGTACTACAAATCAGAGTAATATTAAAT
GGTACACAGCCACTGACAATGGAGACGGAACTTTTTCAACAACCTTTAATATCCGCAATCATCAGGCTTTGTCCGGAACC
TACATCAATCATATTTATGTAAAATATAAAGACGGTAGTGAGCATAGTTATGCAACAGATTCGGTTAGCATGTCCGCAGA
ACAGATAAAAACGAAAGTAGCTGTCACGAAACGCTCGATCTACAATTATGAAGTAACAGTGACAGATGCTTATGGAGATG
GAAATATCATCCTACCTACCTGGTCTGAAGTCAACGGGCAAGATGATATCCAGTGGTACACAGCTACTAAAACTGGAAAT
GGTATCTACAAGTTCACTATTGATACGCAAAAACACACTGGTAGCGGGCTTTTCCACACACATGTCTACCGCAATCTCAA
CGGTCAAATGATTGGACTAACAGGTACGAGCTATCAAGTAGAGAAGCCTGTTATTTCTTTCCAACCCAATTATGCCGCTG
CAACGACTTATCCAAAAGGGCAATGCACTTGGGGCGCTAAAGCTCTAGCACCTTGGGCTGGCAACTACTGGGGCAATGGT
GGCGATTGGGCTACTAGTGCCAGACGTGCTGGTTTTAAAACAGGAACAACTCCACAAGTCGGAGCCATTATTTGTTGGAC
AGATGGTAGTTACGGACACGTTGGAGTCGTCACTCACGTGGCCTCAAACACACGCATTCAGATTCAAGAGGCAAACTACG
CTGGGAAACAGTACATTGGCAACTTTCGTGGCTGGTTTAATCCCCATGCAGCTGGGCAAGGAGTAGTCAGTTACATTTAT
CCAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

44.961

80.374

0.361