Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   HUF98_RS16800 Genome accession   NZ_CP054560
Coordinates   3471233..3472033 (-) Length   266 a.a.
NCBI ID   WP_002027454.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain YC103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3466233..3477033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS16780 (HUF98_16705) - 3467298..3467996 (-) 699 WP_000058788.1 YfgM family protein -
  HUF98_RS16785 (HUF98_16710) hisS 3468025..3469317 (-) 1293 WP_000095254.1 histidine--tRNA ligase -
  HUF98_RS16790 (HUF98_16715) ispG 3469314..3470429 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  HUF98_RS16795 (HUF98_16720) - 3470451..3471242 (-) 792 WP_179007037.1 helix-turn-helix domain-containing protein -
  HUF98_RS16800 (HUF98_16725) pilF 3471233..3472033 (-) 801 WP_002027454.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  HUF98_RS16805 (HUF98_16730) rlmN 3472049..3473281 (-) 1233 WP_031959661.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  HUF98_RS16810 (HUF98_16735) ndk 3473404..3473835 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  HUF98_RS16815 (HUF98_16740) iscX 3473949..3474149 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  HUF98_RS16820 (HUF98_16745) - 3474249..3474800 (-) 552 WP_000669565.1 phosphatase PAP2 family protein -
  HUF98_RS16825 (HUF98_16750) - 3474825..3476123 (-) 1299 WP_001991191.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30124.47 Da        Isoelectric Point: 9.2307

>NTDB_id=453311 HUF98_RS16800 WP_002027454.1 3471233..3472033(-) (pilF) [Acinetobacter baumannii strain YC103]
MSTPKLKIMLCMGVAVALLTSGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=453311 HUF98_RS16800 WP_002027454.1 3471233..3472033(-) (pilF) [Acinetobacter baumannii strain YC103]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGACAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACACAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCATCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.624

100

0.996
  pilF Acinetobacter baylyi ADP1

74.231

97.744

0.726