Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   HUF98_RS02380 Genome accession   NZ_CP054560
Coordinates   487877..488761 (+) Length   294 a.a.
NCBI ID   WP_024433131.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain YC103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 482877..493761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS02355 (HUF98_02355) - 483275..484522 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  HUF98_RS02360 (HUF98_02360) wrbA 484810..485403 (+) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  HUF98_RS02365 (HUF98_02365) - 485456..486031 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  HUF98_RS02370 (HUF98_02370) - 486104..486817 (-) 714 WP_000201544.1 DUF3108 domain-containing protein -
  HUF98_RS02375 (HUF98_02375) - 486975..487646 (-) 672 WP_140953017.1 hypothetical protein -
  HUF98_RS02380 (HUF98_02380) tonB2 487877..488761 (+) 885 WP_024433131.1 energy transducer TonB Machinery gene
  HUF98_RS02385 (HUF98_02385) ybeY 488851..489327 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  HUF98_RS02390 (HUF98_02390) - 489337..490425 (-) 1089 WP_000122983.1 PhoH family protein -
  HUF98_RS02395 (HUF98_02395) miaB 490463..491914 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33621.54 Da        Isoelectric Point: 9.6000

>NTDB_id=453297 HUF98_RS02380 WP_024433131.1 487877..488761(+) (tonB2) [Acinetobacter baumannii strain YC103]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRKLKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=453297 HUF98_RS02380 WP_024433131.1 487877..488761(+) (tonB2) [Acinetobacter baumannii strain YC103]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAAAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997