Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPAKL86_RS01440 Genome accession   NC_019563
Coordinates   261544..262593 (-) Length   349 a.a.
NCBI ID   WP_015086720.1    Uniprot ID   -
Organism   Helicobacter pylori Aklavik86     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 256544..267593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL86_RS01420 (HPAKL86_01365) rpsL 257637..258029 (+) 393 WP_001142324.1 30S ribosomal protein S12 -
  HPAKL86_RS01425 (HPAKL86_01370) rpsG 258043..258510 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  HPAKL86_RS01430 (HPAKL86_01375) fusA 258522..260600 (+) 2079 WP_000101839.1 elongation factor G -
  HPAKL86_RS01435 (HPAKL86_01380) - 261033..261413 (+) 381 WP_015086719.1 hypothetical protein -
  HPAKL86_RS01440 (HPAKL86_01385) waaF 261544..262593 (-) 1050 WP_015086720.1 lipopolysaccharide heptosyltransferase II Regulator
  HPAKL86_RS01445 (HPAKL86_01390) hisS 262655..263983 (+) 1329 WP_015086721.1 histidine--tRNA ligase -
  HPAKL86_RS01450 (HPAKL86_01395) asd 263970..265013 (+) 1044 WP_015086722.1 aspartate-semialdehyde dehydrogenase -
  HPAKL86_RS01455 (HPAKL86_01400) - 265018..265401 (-) 384 WP_015086723.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39623.48 Da        Isoelectric Point: 9.8130

>NTDB_id=45322 HPAKL86_RS01440 WP_015086720.1 261544..262593(-) (waaF) [Helicobacter pylori Aklavik86]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTSKKIGFNPSASYGSAKRWPTSYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCAKTSIEELIERIAILDLFITNDSGPMHVATSTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=45322 HPAKL86_RS01440 WP_015086720.1 261544..262593(-) (waaF) [Helicobacter pylori Aklavik86]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGTTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATTTCTGCCCCTAAAGAAT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCTCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAACTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGCGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTACCAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCTGCTCACACTCTTTTAGA
AAAACCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361