Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I6I32_RS03570 Genome accession   NZ_CP066041
Coordinates   732538..734904 (+) Length   788 a.a.
NCBI ID   WP_198464939.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 727538..739904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS03545 (I6I32_03545) mutS/mutS2 727538..729874 (-) 2337 WP_198464937.1 endonuclease MutS2 Machinery gene
  I6I32_RS03550 (I6I32_03550) - 729975..730523 (-) 549 WP_000623538.1 CvpA family protein -
  I6I32_RS03555 (I6I32_03555) zapA 730520..730822 (-) 303 WP_000002028.1 cell division protein ZapA -
  I6I32_RS03560 (I6I32_03560) rnhC 730909..731784 (+) 876 WP_198464938.1 ribonuclease HIII -
  I6I32_RS03565 (I6I32_03565) lepB 731794..732408 (+) 615 WP_001108432.1 signal peptidase I -
  I6I32_RS03570 (I6I32_03570) recD/recD2/recDB 732538..734904 (+) 2367 WP_198464939.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6I32_RS03575 (I6I32_03575) tig 734952..736235 (-) 1284 WP_198464940.1 trigger factor -
  I6I32_RS03580 (I6I32_03580) - 736326..736982 (-) 657 WP_198464941.1 DNA alkylation repair protein -
  I6I32_RS03585 (I6I32_03585) vraR 736983..737615 (-) 633 WP_000698402.1 response regulator Regulator
  I6I32_RS03590 (I6I32_03590) - 737626..738624 (-) 999 WP_198464942.1 sensor histidine kinase -
  I6I32_RS03595 (I6I32_03595) liaF 738621..739319 (-) 699 WP_198464943.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88212.97 Da        Isoelectric Point: 4.5371

>NTDB_id=453201 I6I32_RS03570 WP_198464939.1 732538..734904(+) (recD/recD2/recDB) [Streptococcus oralis strain FDAARGOS_1075]
MEVYFSGTIERIIFENPSNFYRILLLDIEDTNAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDSYGDNTIDEILEHPEKLEGISGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMEA
RDLLEQTLTLLESSRPVELDPSQVAQELAHLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKKQSQDLETIQKH
IASVEEELGIQYDTIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSSLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQIPLIPQTRLERIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPQQKGQVSFEATQCHYRTGDKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVIYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASKRMLERNLIYTAITRAKSKLILLGELQAFDYAVK
HIGTARKTYLIERFSDLIENIEESKQAFSETATSSDSEQSYILTEENWSSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=453201 I6I32_RS03570 WP_198464939.1 732538..734904(+) (recD/recD2/recDB) [Streptococcus oralis strain FDAARGOS_1075]
ATGGAAGTTTATTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATCCCAGTAATTTTTATCGCATTCTCCTCCTAGA
TATCGAAGATACCAATGCCGAGGACTTTGACGATTTTGAAATCATCGTTACAGGAACCATGGCGGATGTGATTGAAGGTG
AAGACTACACTTTTTGGGGACAAATCGTTCAGCACTCCAAGTATGGGGAACAGCTGCAGATCAGCCGTTATGAGCGAGCA
AAACCCACTAGTAAGGGTCTAGTCAAGTACTTTTCTAGTAGCCATTTCAAGGGAATTGGACTCAAAACTGCCCAGAAAAT
CGTTGATAGCTACGGTGACAATACCATTGACGAAATTCTGGAACATCCTGAAAAGCTAGAAGGTATCTCAGGACTCTCTG
CCAAAAACCGTGAGGCTTTTGTTTCCACCCTCCGTCTCAACTATGGGACAGAAATGGTCTTGGCAAAACTAGCTAACTAC
GGCATTCCCAATAAACTGGCCTTTCAAATTCAAGACTTTTACAAGGAAGAAACCCTCGATGTGGTTGAAAATTATCCCTA
CCAACTGGTTGAAGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAATTGGCTGCCGAACTAGGCATCGAAAGTCAGG
CACCCGAACGCTTCCGTGCTGGCCTTGTCCACAGTCTCTTTCAGGGATGTATGGATACGGGTGATACCTATATGGAAGCC
CGAGATTTGCTGGAACAGACCCTGACTCTCCTCGAATCTTCCCGTCCCGTGGAACTGGATCCCAGCCAAGTAGCTCAGGA
ATTAGCTCATTTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAAATCTTTGATAACAGCCTCTTTTTCGCTGAAG
AAGGCATTCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAGAAACAAAGTCAGGATCTAGAAACCATTCAAAAGCAT
ATCGCCAGTGTTGAGGAAGAGCTTGGTATCCAGTACGATACCATTCAAAAACAGGCTATCTGCGACGCTATCCAGAACAA
GGTCTTTATCCTGACAGGTGGGCCTGGTACAGGTAAGACGACTGTTATCAATGGAATTATCGCTGTTTATGCCCTTTTAG
AAGGACTTGACCTCAGGAAAAAAAGCAGTCTGCCTATCCTTCTAGCAGCTCCAACTGGTCGAGCGGCTCGGCGCATGAAT
GAATTGACAGGTTTACCTAGCGCGACCATACACCGTCATTTGGGGATGACGGGAGACGATGATACCAGTCATCTAGAAGA
TTATCTGGATGCCGACTTCATCATCGTGGATGAGTTTTCTATGGTGGATACTTGGCTAGCTAACCAACTCTTCTCCAATA
TCTCCTCTAACAGTAAAATCCTCATCGTGGGAGACAGTGACCAGTTGCCTTCTGTTAGTCCCGGACAAGTCCTTGCAGAC
TTGCTCCAGATACCCCTGATTCCGCAGACCCGCTTGGAACGGATTTACCGTCAGAGTGAAGAATCAACTATCGTCACCTT
GGCTAGTCAGATTCGACAAGGCATCTTACCAGCTGACTTTACCCAGAAAAAAGCTGACCGCTCCTACTTTGAAATTGCTA
GTGGCCATATCCCAGCTACGATTGAGAAAATTCTTGGTGCTGCCCTCAGAAGTGGCATTCCGGCTCGTGATATTCAGGTG
CTAGCGCCTATGTATCGAGGAACTGCTGGTATTGACGCCATCAACCAACTCATGCAAGACCTGCTCAATCCTCAGCAAAA
GGGGCAAGTTAGCTTTGAAGCAACTCAGTGTCACTATCGAACAGGGGACAAGGTTATTCACCTAGTCAACGACGCTGAAG
TCAATGTCTTTAACGGAGACCTAGGCTACATCACAGACCTGATTCCTGGTAAATACACCGAGTCCAAACAAGACGAGATT
GTCATTGATTTTGATGGCAATGAGGTCATCTATCCACGCAACGAATGGTACAAGATTCGCCTGGCCTATGCCATGAGCAT
CCATAAGTCTCAGGGAAGTGAGTTTCCTGTTGTCATCCTGCCCATTACCAGTGCTAGCAAGCGCATGCTGGAGCGAAATC
TCATCTACACAGCTATCACACGGGCCAAGAGCAAACTTATCTTACTAGGTGAATTACAGGCTTTCGACTATGCAGTCAAG
CACATCGGAACTGCCCGCAAGACCTATCTGATTGAGCGCTTCAGTGATTTAATTGAAAATATTGAAGAAAGTAAACAAGC
CTTCTCTGAAACTGCCACATCAAGTGACTCTGAACAATCCTACATCCTCACCGAGGAAAACTGGTCTAGCATCCCAGCCA
TGATCGGGATTACAGATGCAGACCTCAAAGAGATTTTTGGCAAATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(332-520)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.809

96.827

0.405