Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   I6I32_RS00550 Genome accession   NZ_CP066041
Coordinates   114904..118179 (-) Length   1091 a.a.
NCBI ID   WP_198464663.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 109904..123179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS00540 (I6I32_00540) - 110058..111236 (-) 1179 WP_198464661.1 hypothetical protein -
  I6I32_RS00545 (I6I32_00545) rexA 111254..114907 (-) 3654 WP_198464662.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6I32_RS00550 (I6I32_00550) rexB 114904..118179 (-) 3276 WP_198464663.1 ATP-dependent nuclease subunit B Machinery gene
  I6I32_RS00555 (I6I32_00555) - 118286..118705 (-) 420 WP_198464664.1 EVE domain-containing protein -
  I6I32_RS00560 (I6I32_00560) - 118698..119159 (-) 462 WP_198464665.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6I32_RS00565 (I6I32_00565) - 119306..120115 (+) 810 WP_198464666.1 Cof-type HAD-IIB family hydrolase -
  I6I32_RS00570 (I6I32_00570) - 120258..121166 (+) 909 WP_198464667.1 ABC transporter ATP-binding protein -
  I6I32_RS00575 (I6I32_00575) - 121177..121929 (+) 753 WP_084878249.1 ABC transporter permease -
  I6I32_RS00580 (I6I32_00580) - 121968..122846 (-) 879 WP_198464668.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124652.59 Da        Isoelectric Point: 5.8712

>NTDB_id=453178 I6I32_RS00550 WP_198464663.1 114904..118179(-) (rexB) [Streptococcus oralis strain FDAARGOS_1075]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDLPAKTS
LDDIGLGMAFYKCLAELDPKDLRVYGAIKQDPQFIQQLVELYHEMTTAQMSFLDLESLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFSQLALVIDGFTRFSAEEERVVDLLHRKGAEIVIGVYASKKAYTSPFTEGNLYQAS
VEFLHHLGAKYQTPAQDRSQTHEKMDSFDKASRLLESSYDFSELTLEVDEKDRENLQIWSCLMQKEELELVARAIRQKLH
DHPELSYKNFRILLGDVASYQLSLKTIFEQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDTFEQYLRYLGINGLPAFQQTFTKSHHGKFDLVHLNTLRLRILSPLETLFASRKQKTENLLQKWNTFLKNAALSK
QMQELTATMEALEQERQAEVWKAFCRVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKNRYTMLSLVNAARKQLILSAPSLLNENE
SKESAYLQELVGFGFSRLEKKIHQKSLSKDDMGSYHSLLSSLVSYHQQAGSSENEEDVTFVKVLARVMGKKLDQKGLTNP
ALPTSPSSKPLEKETLKVLYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALKLPA
ENSFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPYFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLLAVKSLA
GAVAEVSKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLELSDGKRLVGEKLKQAWFEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=453178 I6I32_RS00550 WP_198464663.1 114904..118179(-) (rexB) [Streptococcus oralis strain FDAARGOS_1075]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACTGAAATTTTAACGAGAGAGGCAGAAGAGCTGGTTGCTGCTGG
TAAGCGGGTTTTCTACATTGCTCCCAACTCTCTTTCATTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTTACCCGTTTTGCTCAGATGGCTCGTTACCTGGTTTTAAATGATTTGCCAGCTAAGACGAGT
CTAGATGACATCGGTCTTGGGATGGCTTTTTATAAGTGCCTTGCGGAACTCGATCCCAAGGACTTACGTGTTTATGGTGC
GATTAAACAAGATCCTCAATTTATCCAGCAGTTGGTTGAACTTTATCATGAGATGACGACTGCTCAAATGAGCTTTTTGG
ACTTGGAAAGTCTGACAGATGAGGATAAGCGAGCAGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTCAATCAA
GGTCAGTTGGCTCAGGGAAGTCAGTTATCTCATTTGATTGAGGCTATTGAGAATGACAAGGTAAGTAGTGATTTCAGTCA
ACTTGCCTTAGTCATTGACGGATTTACCCGTTTTTCTGCCGAGGAAGAGCGTGTAGTGGATCTACTCCACCGAAAAGGTG
CCGAGATTGTCATTGGGGTCTATGCAAGCAAGAAAGCTTATACCAGTCCGTTTACTGAAGGAAATCTCTATCAAGCCAGT
GTGGAATTTCTTCATCATTTGGGGGCAAAATACCAAACACCTGCTCAGGATCGTTCTCAGACACATGAGAAAATGGATAG
TTTTGACAAGGCCTCTCGTTTGCTGGAGTCTTCTTATGACTTTTCAGAATTAACATTGGAGGTTGATGAGAAAGACCGTG
AAAATCTGCAAATTTGGTCTTGTTTGATGCAAAAAGAGGAGTTGGAGCTGGTGGCTCGCGCTATTCGTCAGAAATTACAT
GACCATCCAGAATTAAGTTACAAGAATTTTCGTATTCTCTTGGGTGATGTGGCTTCTTACCAGTTATCGCTGAAAACCAT
TTTTGAGCAGTACCAGATTCCTTTCTATCTTGGTAGAAGTGAATCCATGGCCCATCATCCCTTAACCCAGTATGTCGAAT
CTATTTTGCGTTTGAAACGCTACCGTTTCCGTCAGGAGGATTTGATTAATCTCCTCCGAACTGGTCTGTATACTGACCTT
AGCCAAGCGGATATTGATACTTTTGAGCAATATCTCCGCTATCTTGGCATCAATGGCTTGCCAGCTTTTCAGCAAACATT
TACTAAATCCCACCATGGAAAATTTGATTTAGTTCATTTAAATACTCTTCGTTTGCGTATTTTGTCACCACTTGAAACCT
TATTTGCCAGTCGGAAGCAAAAGACTGAAAATCTCTTGCAAAAGTGGAATACTTTTCTAAAAAATGCTGCTTTAAGCAAG
CAGATGCAAGAATTGACAGCTACCATGGAAGCTCTTGAACAGGAAAGACAAGCCGAAGTTTGGAAAGCGTTCTGTCGTGT
TTTAGAACAATTTGCGACGGTTTTTGCTGGTTCACAAGTTAGTCTGGAGGATTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCCCAGTATCGCACCATTCCAGCAACTGTTGACACCGTTCTGGTGCAGAGTTACGATTTGATTGCGCCCTTAACG
GCTGATTTTGTCTATGCCATTGGGCTGACTCAGGATCATTTACCAAAAATTGCGCAAAACACCAGTCTTTTGACTGACGA
AGAAAGACAAAGCCTAAACCAAGCGACTGAAGAGGGAGCACAATTACTGATTGCAAGTAGTGAAAACCTCAAGAAAAATC
GCTACACCATGCTTTCCTTAGTCAATGCTGCCCGTAAACAATTGATTTTGTCAGCTCCAAGTCTTCTTAATGAAAATGAG
AGCAAGGAATCAGCCTATCTTCAGGAACTGGTGGGTTTTGGATTTAGCCGGTTAGAGAAGAAGATTCATCAAAAAAGTCT
GTCTAAGGATGATATGGGTTCATATCACAGTCTCTTGTCTAGTCTCGTTTCCTATCATCAGCAGGCGGGTTCTAGTGAAA
ATGAAGAAGATGTGACCTTTGTCAAGGTTCTAGCGCGTGTGATGGGGAAAAAACTTGATCAAAAAGGTCTTACAAATCCT
GCACTCCCAACTAGCCCAAGCAGCAAACCATTAGAGAAAGAGACCTTGAAGGTTCTCTATCCAGCTGACAAGGAGTTTTA
CCTGTCTACGTCTGGTTTGACGGAGTTTTACCGCAATGAATACAGCTATTTCCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTGCGCCTTCGTCCAGATGCTCGCAGTCACGGGAATTTCTTGCACCGTATTTTTGAACGTGCCTTGAAACTACCTGCT
GAAAATTCCTTTGACCAACGTCTGGAGCAAGCTATCAAGGAAACCAGCCAAGAACGCGAATTTGAAGCTATTTATCAGGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTCTACTTGATGTCGCGCGAACTACGGGCCACATCCTTCGTCATAATCCAG
CCATTGAAACCATCCAAGAGGAAGCAACATTTGGTGGTAAAGATCAGGCCTTTATTCAATTGGATAATGGTCGCAGTGTC
CATGTGCGAGGCAAGGTTGACCGCATTGACCGCCTGAAAGCTGATGGAGCGTTAGGAGTGGTAGACTACAAGTCTAGTCT
GACTCAGTTCCAGTTTCCGTATTTCTTTAATGGGCTTAATTCCCAACTGCCCACCTATCTTGCTGCCCTAAAAAGAGAAG
GGGAGCAGAACTTTTTCGGTGCCATGTACTTGGAAATGGCTGAGCCTGTCCAATCTTTATTAGCTGTTAAAAGTCTGGCA
GGAGCAGTAGCAGAAGTCAGCAAGTCTATGAAATACCAGGGACTCTTTTTAGAGAAAGAAAGCAGTCACTTGGGAGAGTT
TTATAACAAAAACAAGGCCAATCAGCTGACAGACGAGGAATTCCAGCTCCTACTAGACTATAATGCCCATCTGTACAAGA
AGGCAGCTGAGAAGATTTTAGAAGGCCAGTTTGCCATCAATCCATATACAGAAAACGGCAGAAGTATTGCTCCATACGTC
CAGCAACACCAAGCCATCACAGGTTTTGAAGCAAATTACCACTTGGGACAAGCCCGTTTCCTTGAGAAATTAGAGTTGTC
TGACGGCAAACGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGTTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

89.459

100

0.895