Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   I6H85_RS07070 Genome accession   NZ_CP066027
Coordinates   1379884..1382706 (+) Length   940 a.a.
NCBI ID   WP_002778228.1    Uniprot ID   A0ABN0ERT4
Organism   Campylobacter coli strain FDAARGOS_1028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1374884..1387706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H85_RS07050 (I6H85_07050) - 1375206..1375805 (-) 600 WP_002778236.1 phosphoribosylanthranilate isomerase -
  I6H85_RS07055 (I6H85_07055) trpD 1375792..1377384 (-) 1593 WP_002778234.1 anthranilate phosphoribosyltransferase -
  I6H85_RS07060 (I6H85_07060) - 1377386..1378627 (-) 1242 WP_002778232.1 anthranilate synthase component I family protein -
  I6H85_RS07065 (I6H85_07065) - 1379011..1379796 (+) 786 WP_002778230.1 sulfite exporter TauE/SafE family protein -
  I6H85_RS07070 (I6H85_07070) uvrA 1379884..1382706 (+) 2823 WP_002778228.1 excinuclease ABC subunit UvrA Machinery gene
  I6H85_RS07075 (I6H85_07075) - 1382708..1383241 (+) 534 WP_002778227.1 hypothetical protein -
  I6H85_RS07080 (I6H85_07080) - 1383263..1383940 (+) 678 WP_002778226.1 hypothetical protein -
  I6H85_RS07085 (I6H85_07085) - 1383953..1384543 (+) 591 WP_002778225.1 hypothetical protein -
  I6H85_RS07090 (I6H85_07090) - 1384536..1384979 (+) 444 WP_002778224.1 YqaA family protein -
  I6H85_RS07095 (I6H85_07095) polA 1385043..1387682 (+) 2640 WP_002780668.1 DNA polymerase I -

Sequence

Protein


Download         Length: 940 a.a.        Molecular weight: 105080.30 Da        Isoelectric Point: 8.4459

>NTDB_id=453086 I6H85_RS07070 WP_002778228.1 1379884..1382706(+) (uvrA) [Campylobacter coli strain FDAARGOS_1028]
MNDTIKIIGAKENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFGTLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGL
TPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIQHCHQCGQKISSMSASDIVGEILKFPKGAKIIIYAPLVREKK
GTYADLLENLRNKGYVRAQIDGVLVRLDEDIELSKTKKHTIKLVIDRLEIQEDLLSRLASDIEKGLEESFGEIEIEVLNP
DEVGLNKHYHFSEHSACFACKISFVPLEPLSFSFNSPKGACEACDGLGIRYTLDMKKIIDESLSLENGAVKIMYGFNKSY
YYKFLIAFCEQNEIPIKLPFAELSEEQKRLVLYGNAKTIDFFWKRNRLKRTFEGVVKMAYEMLKDEKDLAEYMSEKICKD
CAGHRLKPESLAVKIASKGLGEILDMSIEDSTSFFANKKNFSYLSEQERLISEPILKEINERLFFLYDVGLGYLSLGRDA
RTISGGEAQRIRIASQIGSGLSGVMYVLDEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKA
GKFGGEVVFAGTYKELLKSKSETALYMNGKKQISQLQNREQKEWLELKNVNINNIKDLSVSFPLQNLVAITGVSGSGKSS
LILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQSPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKA
GRFSFNVKGGRCEKCSGDGEIKIEMHFLPDVMVVCDTCHGKRYNDATLEIKYKGKNISEILNMSVLEASEFFAAVPKIKQ
KLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLHFEDVNKLILVLQHLVDLKNSVFVI
EHNLDVIKNADYIIDMGPEGGVKGGKIISTGSVEKVAKDHKKTKSYTGYYLDLELKNAKS

Nucleotide


Download         Length: 2823 bp        

>NTDB_id=453086 I6H85_RS07070 WP_002778228.1 1379884..1382706(+) (uvrA) [Campylobacter coli strain FDAARGOS_1028]
ATGAATGATACGATAAAAATCATTGGCGCAAAGGAAAATAATCTTAAAAATATTCATCTTGAAATTCCAAAAAATAAACT
CATTGTTTTTACAGGATTAAGCGGTAGTGGAAAATCAACCCTTGCTTTTGGCACACTCTATGCCGAAGGTCAACGCCGTT
ATATAGAAAGTTTGAGTGCTTATGCAAGACAATTTTTAGACAAGGTAGGCAAACCCGATGTGGATAAAATCGAAGGTTTA
ACCCCTGCTATTGCGATTGATCAAAAAACCACTTCTAAAAATCCGCGTTCTACAGTCGGAACCATCACTGAAATTTATGA
TTATTTAAGACTTTTATATGCAAGAGTGGGCATTCAGCATTGCCATCAATGCGGACAAAAAATCTCATCTATGAGTGCAA
GTGATATAGTAGGAGAAATTTTAAAATTTCCAAAAGGAGCTAAAATCATCATCTACGCTCCTTTGGTGCGTGAAAAAAAA
GGAACTTATGCGGATTTACTTGAAAATTTGCGCAATAAAGGCTATGTAAGAGCGCAAATTGATGGGGTTTTAGTAAGACT
TGATGAAGATATAGAACTTTCAAAAACTAAAAAACATACGATAAAACTCGTCATTGATAGACTCGAAATACAAGAAGATC
TACTTTCTCGCCTTGCAAGCGATATAGAAAAAGGTTTGGAAGAAAGCTTTGGAGAAATCGAGATAGAAGTCTTAAATCCC
GATGAAGTAGGACTTAATAAGCACTATCACTTTAGCGAACACTCCGCTTGCTTTGCTTGTAAAATTTCCTTTGTTCCTCT
TGAGCCTTTAAGTTTTTCTTTTAACTCTCCAAAAGGGGCTTGTGAAGCCTGTGATGGACTTGGAATTCGCTATACCCTAG
ATATGAAAAAAATCATCGATGAAAGCCTAAGTCTTGAAAATGGCGCGGTAAAAATAATGTATGGATTTAACAAAAGCTAT
TATTATAAATTTTTAATTGCTTTTTGCGAGCAAAATGAAATTCCTATTAAACTCCCTTTTGCTGAACTTAGCGAAGAACA
AAAACGCCTTGTGCTATACGGAAATGCAAAAACCATTGACTTTTTTTGGAAAAGAAATCGCCTCAAACGCACCTTTGAAG
GTGTGGTAAAAATGGCTTATGAAATGCTAAAAGATGAAAAAGACTTAGCAGAATACATGAGTGAAAAAATTTGCAAAGAT
TGTGCAGGTCATCGTTTAAAACCTGAAAGTTTAGCCGTAAAAATAGCCTCTAAAGGACTAGGCGAAATTTTAGATATGAG
TATAGAAGATAGCACTAGCTTTTTTGCAAATAAGAAAAATTTCTCTTATTTAAGCGAGCAAGAAAGACTTATCTCTGAAC
CCATATTAAAAGAAATCAACGAAAGACTTTTCTTTTTATATGATGTAGGACTAGGCTATTTATCTTTAGGACGCGATGCA
AGGACGATTAGCGGAGGTGAGGCACAAAGAATTCGCATCGCTTCACAAATTGGCAGTGGTTTAAGTGGGGTGATGTATGT
TTTAGATGAACCTAGTATCGGACTTCATGAAAGAGATACAGCAAAACTCATTAAAACCTTAAGAAATTTACAACAAAAAG
GCAATACTCTAATTGTCGTAGAGCACGATAAAATGACTATAGAAGAAGCTGATTTTATCGTAGATATTGGCCCAAAAGCA
GGAAAATTTGGAGGCGAAGTGGTATTTGCTGGAACTTATAAAGAACTTTTAAAAAGCAAAAGTGAAACCGCACTTTATAT
GAACGGCAAGAAGCAAATTTCACAGCTTCAAAACAGAGAACAAAAAGAATGGCTAGAACTTAAAAATGTAAATATCAATA
ATATCAAAGATCTAAGCGTTTCTTTTCCTTTGCAAAATTTAGTCGCGATCACAGGTGTTTCAGGATCTGGAAAAAGCTCT
CTCATACTTCAAACCTTACTGCCTTTTGCACAAGAAGAATTAAACCGCGCCAAAAAAGTAAAGAAATTAGGTGGGGTGCA
GATTGAAGGGCTTGAAAAACTAGATAAGGTTATTTATCTTGATCAAAGTCCTATAGGACGAACCCCGCGATCAAATCCTG
CTACTTATACAGGTGCCATGGATGAAATTCGCAATCTTTTTGCTGCTACCAAAGAAGCTAAAATGCGAGGCTATAAAGCG
GGGCGTTTTTCTTTTAATGTTAAGGGTGGAAGATGTGAGAAATGCAGTGGCGATGGAGAGATTAAAATAGAAATGCACTT
CTTGCCCGATGTAATGGTGGTTTGCGATACTTGCCATGGCAAACGCTATAATGATGCCACACTAGAGATTAAATACAAAG
GTAAAAATATCAGTGAAATTTTAAATATGAGCGTTTTAGAAGCAAGTGAATTTTTTGCAGCTGTGCCAAAAATCAAACAA
AAACTTGATACCTTAGTAAAAGTCGGACTTGATTATCTTACCCTAGGACAAAATGCAACGACTTTAAGTGGGGGTGAAGC
GCAAAGGATAAAACTTGCAAAAGAATTAAGCCGCAGTGACACAGGAAAAACGCTTTACATACTTGATGAGCCGACCACAG
GGCTACATTTTGAAGATGTCAATAAACTCATTTTAGTTTTACAACACTTAGTCGATCTTAAAAATTCTGTTTTTGTGATA
GAGCATAATTTAGATGTGATTAAAAATGCTGATTATATTATCGATATGGGTCCAGAAGGCGGAGTAAAGGGTGGAAAAAT
CATTAGTACAGGAAGCGTGGAAAAAGTTGCAAAAGATCATAAGAAAACAAAATCTTATACAGGATATTATTTGGATTTAG
AGCTTAAAAACGCAAAGAGTTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-386)

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(616-852)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

52.366

100

0.53
  uvrA Streptococcus pneumoniae TIGR4

52.366

100

0.53
  uvrA Streptococcus pneumoniae D39

52.366

100

0.53