Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPAKL117_RS08645 Genome accession   NC_019560
Coordinates   1384535..1384795 (-) Length   86 a.a.
NCBI ID   WP_000602758.1    Uniprot ID   -
Organism   Helicobacter pylori Aklavik117     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1379535..1389795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL117_RS08580 (HPAKL117_06695) - 1379969..1380097 (-) 129 WP_000243255.1 hypothetical protein -
  HPAKL117_RS06670 (HPAKL117_06700) - 1380097..1382031 (-) 1935 WP_015086308.1 type IA DNA topoisomerase -
  HPAKL117_RS06675 (HPAKL117_06705) - 1382024..1384522 (-) 2499 WP_015086309.1 VirB4 family type IV secretion system protein -
  HPAKL117_RS08645 (HPAKL117_06710) comB3 1384535..1384795 (-) 261 WP_000602758.1 hypothetical protein Machinery gene
  HPAKL117_RS06685 (HPAKL117_06715) - 1384796..1385098 (-) 303 WP_000649843.1 TrbC/VirB2 family protein -
  HPAKL117_RS06690 (HPAKL117_06720) - 1385088..1387004 (-) 1917 WP_015086310.1 toprim domain-containing protein -
  HPAKL117_RS06695 (HPAKL117_06725) - 1387015..1387779 (-) 765 WP_015086311.1 hypothetical protein -
  HPAKL117_RS08530 (HPAKL117_06730) - 1387823..1388065 (+) 243 Protein_1300 hypothetical protein -
  HPAKL117_RS06705 (HPAKL117_06735) - 1388226..1388728 (-) 503 Protein_1301 pyruvate kinase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10184.06 Da        Isoelectric Point: 4.6082

>NTDB_id=45308 HPAKL117_RS08645 WP_000602758.1 1384535..1384795(-) (comB3) [Helicobacter pylori Aklavik117]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSTSFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=45308 HPAKL117_RS08645 WP_000602758.1 1384535..1384795(-) (comB3) [Helicobacter pylori Aklavik117]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTGAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCACTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment