Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6H85_RS03630 Genome accession   NZ_CP066027
Coordinates   701613..702161 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain FDAARGOS_1028     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 696613..707161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H85_RS03600 (I6H85_03600) ctsT 696656..696961 (-) 306 WP_002777852.1 hypothetical protein Machinery gene
  I6H85_RS03605 (I6H85_03605) proC 696958..697695 (-) 738 WP_002787902.1 pyrroline-5-carboxylate reductase Machinery gene
  I6H85_RS03610 (I6H85_03610) fliW 697695..698084 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  I6H85_RS03615 (I6H85_03615) - 698248..698895 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  I6H85_RS03620 (I6H85_03620) lon 698911..701286 (+) 2376 WP_002777089.1 endopeptidase La -
  I6H85_RS03625 (I6H85_03625) rpsR 701342..701602 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  I6H85_RS03630 (I6H85_03630) ssb 701613..702161 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  I6H85_RS03635 (I6H85_03635) rpsF 702170..702547 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  I6H85_RS03640 (I6H85_03640) - 702826..704097 (+) 1272 WP_002777080.1 MFS transporter -
  I6H85_RS03645 (I6H85_03645) - 704097..705098 (+) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase family protein -
  I6H85_RS03650 (I6H85_03650) - 705091..705732 (-) 642 Protein_712 DUF535 family protein -
  I6H85_RS09820 - 705696..705947 (-) 252 WP_048813181.1 hypothetical protein -
  I6H85_RS03655 (I6H85_03655) rseP 705944..707047 (-) 1104 WP_002777070.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=453074 I6H85_RS03630 WP_002777084.1 701613..702161(-) (ssb) [Campylobacter coli strain FDAARGOS_1028]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=453074 I6H85_RS03630 WP_002777084.1 701613..702161(-) (ssb) [Campylobacter coli strain FDAARGOS_1028]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379