Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   I6H77_RS08815 Genome accession   NZ_CP066021
Coordinates   1839749..1843024 (-) Length   1091 a.a.
NCBI ID   WP_000772320.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1834749..1848024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS08805 (I6H77_08805) - 1834903..1836081 (-) 1179 WP_000174746.1 hypothetical protein -
  I6H77_RS08810 (I6H77_08810) rexA 1836099..1839752 (-) 3654 WP_000802719.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6H77_RS08815 (I6H77_08815) rexB 1839749..1843024 (-) 3276 WP_000772320.1 ATP-dependent nuclease subunit B Machinery gene
  I6H77_RS08820 (I6H77_08820) - 1843131..1843550 (-) 420 WP_001138501.1 EVE domain-containing protein -
  I6H77_RS08825 (I6H77_08825) - 1843543..1844004 (-) 462 WP_000170425.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6H77_RS08830 (I6H77_08830) - 1844151..1844960 (+) 810 WP_000593587.1 Cof-type HAD-IIB family hydrolase -
  I6H77_RS08835 (I6H77_08835) - 1845103..1846011 (+) 909 WP_000859679.1 ATP-binding cassette domain-containing protein -
  I6H77_RS08840 (I6H77_08840) - 1846022..1846774 (+) 753 WP_000581965.1 ABC transporter permease -
  I6H77_RS08845 (I6H77_08845) - 1846813..1847691 (-) 879 WP_000639367.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124650.43 Da        Isoelectric Point: 5.8580

>NTDB_id=453041 I6H77_RS08815 WP_000772320.1 1839749..1843024(-) (rexB) [Streptococcus oralis strain FDAARGOS_1020]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDLPAKTS
LDDIGLGMTFYKCLAELDPKDLRVYGAIKQDPQFIQQLMELYHEMTTAQMSFLDLESLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFSQIALVIDGFTRFSAEEERVVDLLHRKGVEIVIGAYASKKAYISPFTEGNLYQAS
VEFLHHLGAKYQTPAQDRSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
DHPELSYKNFRILLGDVASYRLSLKTIFDQYQIPFYLGRSESMSHHPLTQYAESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDAFEQYLRYLGINGLPSYQQTFTKSHHGKFDLERLNSLRLRVLAPLETLFASRKQKAENLLQKWNAFLKNAALSK
QMQELTATMETLEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLSLLHSGMSLSQYRTIPATVDTVLVQSYDLIAPMT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKNRYTMLSLVNAARKQLILSAPSLLNENE
SKESAYLQELVGFGFSRLEKKIHQKSLSKDDMGSYHSLLSSLVSYHQQAGSSENEEDLTFVKVLARVMGKKLDQKGLTNP
ALPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRILERALKLPA
ENSFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQDFFGAMYLEMAEPVQSLLTVKSLA
GAVVEVSKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILQGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLSDGKRLVGEKLKQAWFEKMREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=453041 I6H77_RS08815 WP_000772320.1 1839749..1843024(-) (rexB) [Streptococcus oralis strain FDAARGOS_1020]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACTGAAATTTTAACGAGAGAGGCAGAAGAGCTAGTTGCTGCAGG
CAAGCGGGTTTTCTACATCGCCCCCAACTCTCTTTCATTTGAAAAGGAACGTGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTTACGCGTTTCGCTCAAATGGCTCGTTACCTGGTCTTGAATGACTTGCCAGCTAAGACGAGT
CTTGATGACATCGGGCTTGGGATGACTTTTTATAAATGCCTTGCCGAACTCGATCCCAAGGACTTGCGTGTTTATGGTGC
GATTAAGCAGGATCCTCAATTTATCCAGCAGTTGATGGAACTTTATCATGAGATGACGACTGCTCAGATGAGCTTTTTGG
ACTTGGAAAGTTTGACTGATGAGGATAAACGAGCAGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTTAATCAA
GGTCAGTTGGCTCAGGGAAGTCAGCTGTCCCATTTGATTGAGGCTATTGAGAATGACAAGGTAAGCAGTGATTTCAGTCA
GATTGCCTTGGTTATTGATGGATTTACCCGTTTTTCTGCCGAGGAAGAGCGTGTAGTGGATCTGCTTCATCGAAAAGGTG
TCGAGATTGTCATTGGTGCTTATGCAAGCAAGAAAGCCTATATCAGTCCGTTCACTGAAGGTAATCTCTATCAAGCCAGT
GTGGAATTTCTTCATCATTTGGGGGCAAAATACCAAACACCTGCTCAGGATCGTTCTCAGACTCATGAGAAAATGGATAG
TTTTGACAAGGCTTCTCGTTTGCTAGAGTCTTCTTATGACTTTTCAGAACTCGCTTTAGATGTTGATGAGAAGGATCGTG
AAAATCTGCAAATCTGGTCCTGCTTGACGCAAAAAGAGGAGTTGGAGTTAGTAGCGCGTAGCATTCGTCAGAAATTACAT
GACCATCCAGAACTGAGTTACAAGAATTTCCGTATTTTGCTGGGGGATGTGGCATCTTACCGGCTATCACTGAAAACTAT
TTTTGACCAGTACCAGATTCCTTTCTATCTTGGTAGAAGTGAATCCATGTCCCATCATCCCTTAACCCAGTATGCCGAAT
CTATTTTGCGTTTGAAACGCTACCGTTTTCGTCAGGAGGATTTGATTAATCTCCTCAGAACTGGTCTGTATACTGACCTT
AGCCAAGCGGATATTGATGCTTTTGAGCAATATCTCCGCTATCTTGGTATCAATGGCTTGCCATCTTATCAGCAGACCTT
TACCAAATCCCACCATGGAAAATTTGATTTAGAGCGTTTAAATTCTCTTCGTCTGCGCGTTTTGGCGCCACTTGAAACCT
TATTTGCCAGTCGAAAACAAAAGGCTGAAAATCTCTTGCAAAAGTGGAATGCTTTTCTAAAAAATGCTGCTTTAAGCAAG
CAGATGCAAGAATTGACAGCTACTATGGAAACTCTAGAACAGGAAAGACAAGCCGAAGTTTGGAAAGCCTTCTGCCATGT
TTTAGAACAATTTGCGACCGTTTTTGCCGGTTCACAAGTTAGTCTAGAGGACTTCCTGTCCTTGCTTCATTCTGGGATGA
GTTTGTCCCAGTATCGCACCATTCCAGCAACTGTTGATACTGTTCTGGTGCAGAGTTATGATTTGATTGCACCTATGACC
GCTGACTTTGTCTACGCCATCGGGCTGACTCAGGATCATTTACCAAAAATTGCGCAAAACACCAGCCTGTTAACAGACGA
AGAAAGACAAAGCCTAAACCAAGCGACTGAAGAGGGAGCACAATTACTGATTGCAAGTAGTGAAAACCTCAAGAAAAATC
GCTACACCATGCTTTCCTTAGTCAATGCTGCCCGTAAACAATTGATTTTGTCAGCTCCAAGTCTTCTTAATGAAAATGAG
AGCAAGGAATCAGCCTATCTTCAGGAACTGGTGGGTTTTGGATTTAGCCGGTTAGAGAAGAAGATTCATCAAAAAAGTCT
GTCTAAGGATGATATGGGTTCATATCACAGTCTCTTGTCTAGTCTCGTTTCCTATCATCAGCAGGCGGGTTCTAGTGAAA
ATGAAGAAGATTTGACCTTTGTCAAGGTTCTGGCGCGTGTGATGGGGAAAAAACTTGACCAAAAAGGTCTTACAAATCCT
GCACTCCCAACTAGCCCAAGCAGCAAGCCATTAGAGAAAGAGACCTTGCAGGCTCTCTATCCAGCTGACAAAGAGTTTTA
CCTGTCTACGTCTGGTTTGACAGAGTTTTACCGCAATGAATACAGTTATTTCCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTGCGCCTGCGTCCAGATGCTCGCAGTCATGGGAATTTCTTGCACCGTATTTTGGAACGTGCCTTGAAACTACCTGCT
GAAAATTCCTTTGATCAGCGTTTGGAACAAGCCATTAAGGAAACCAGCCAAGAACGCGAATTTGAAGCTATTTATCAAGA
AAGTTTGGAAGCCCAATTTACCAAGGAAGTTCTTCTTGATGTTGCTCGGACAACTGGGCATATCCTCCGCCATAATCCAG
CCATTGAAACCATCCAAGAGGAAGCAACATTTGGTGGTAAAGATCAGGCCTTTATTCAATTGGATAATGGTCGGAGTGTC
CATGTGCGAGGCAAGGTTGACCGTATTGACCGCCTGAAAGCTGATGGAGCACTGGGAGTGGTGGACTACAAGTCTAGTCT
GACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTTAATTCCCAACTGCCTACCTATCTTGCTGCCCTAAAAAGAGAAG
GGGAGCAGGACTTTTTCGGAGCCATGTACTTGGAAATGGCTGAACCTGTCCAATCTCTGTTGACCGTTAAGAGTCTGGCA
GGAGCAGTAGTAGAAGTCAGCAAATCAATGAAATACCAAGGACTCTTTTTAGAAAAAGAAAGCAGTCACTTGGGCGAATT
TTACAACAAAAACAAGGCCAACCAGCTGACAGACGAGGAATTCCAGCTCTTATTGGACTACAATGCCCATCTTTACAAGA
AGGCAGCTGAGAAGATTTTACAAGGCCAGTTCGCCATCAATCCCTATACCGAAAATGGCAGAAGCATTGCCCCATACGTT
CAGCAACACCAAGCCATTACTGGATTTGAAGCAAATTACCACTTGGGACAAGCCCGTTTCCTTGAGAAATTAGACTTATC
TGATGGCAAGCGTCTGGTAGGAGAAAAACTTAAGCAAGCTTGGTTTGAAAAAATGAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

89.918

100

0.899