Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPAKL117_RS06655 Genome accession   NC_019560
Coordinates   1376208..1377443 (-) Length   411 a.a.
NCBI ID   WP_015086305.1    Uniprot ID   -
Organism   Helicobacter pylori Aklavik117     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1371208..1382443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL117_RS06615 (HPAKL117_06635) - 1371327..1373054 (-) 1728 WP_015086300.1 type IV secretory system conjugative DNA transfer family protein -
  HPAKL117_RS06620 (HPAKL117_06640) - 1373055..1373612 (-) 558 WP_015086301.1 hypothetical protein -
  HPAKL117_RS06625 (HPAKL117_06645) - 1373613..1373903 (-) 291 WP_000159826.1 hypothetical protein -
  HPAKL117_RS06630 (HPAKL117_06650) - 1373900..1374355 (-) 456 WP_015086302.1 hypothetical protein -
  HPAKL117_RS06635 (HPAKL117_06655) - 1374352..1375293 (-) 942 WP_015086303.1 CpaF/VirB11 family protein -
  HPAKL117_RS06640 (HPAKL117_06660) - 1375293..1375592 (-) 300 WP_000660135.1 hypothetical protein -
  HPAKL117_RS06645 (HPAKL117_06665) - 1375589..1375852 (-) 264 WP_000564645.1 hypothetical protein -
  HPAKL117_RS06650 (HPAKL117_06670) - 1375845..1376138 (-) 294 WP_015086304.1 hypothetical protein -
  HPAKL117_RS06655 (HPAKL117_06680) comB10 1376208..1377443 (-) 1236 WP_015086305.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPAKL117_RS06660 (HPAKL117_06685) - 1377440..1378981 (-) 1542 WP_015086306.1 TrbG/VirB9 family P-type conjugative transfer protein -
  HPAKL117_RS06665 (HPAKL117_06690) - 1378981..1379967 (-) 987 WP_015086307.1 type IV secretion system protein -
  HPAKL117_RS08580 (HPAKL117_06695) - 1379969..1380097 (-) 129 WP_000243255.1 hypothetical protein -
  HPAKL117_RS06670 (HPAKL117_06700) - 1380097..1382031 (-) 1935 WP_015086308.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46481.59 Da        Isoelectric Point: 10.0008

>NTDB_id=45304 HPAKL117_RS06655 WP_015086305.1 1376208..1377443(-) (comB10) [Helicobacter pylori Aklavik117]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPISIKNSVSNTKSK
EKQELEKEYGSNGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=45304 HPAKL117_RS06655 WP_015086305.1 1376208..1377443(-) (comB10) [Helicobacter pylori Aklavik117]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGTCAAAAAGAAACACAGCCTCCAATCTCTATAAAAAATAGTGTTTCTAATACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAACGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGCATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

54.138

70.56

0.382