Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   I6H77_RS08715 Genome accession   NZ_CP066021
Coordinates   1823591..1824661 (-) Length   356 a.a.
NCBI ID   WP_000817856.1    Uniprot ID   A0A1X1HU81
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1818591..1829661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS08695 (I6H77_08695) - 1818790..1819833 (+) 1044 WP_000752719.1 dihydrolipoamide acetyltransferase -
  I6H77_RS08700 (I6H77_08700) lpdA 1819878..1821584 (+) 1707 WP_001162885.1 dihydrolipoyl dehydrogenase -
  I6H77_RS08705 (I6H77_08705) - 1821777..1822766 (+) 990 WP_000874011.1 lipoate--protein ligase -
  I6H77_RS08710 (I6H77_08710) - 1822871..1823512 (+) 642 WP_000890071.1 hypothetical protein -
  I6H77_RS08715 (I6H77_08715) xerS 1823591..1824661 (-) 1071 WP_000817856.1 tyrosine recombinase XerS Machinery gene
  I6H77_RS08720 (I6H77_08720) - 1824801..1825091 (-) 291 WP_001148764.1 hypothetical protein -
  I6H77_RS08725 (I6H77_08725) - 1825072..1825464 (-) 393 WP_000439964.1 hypothetical protein -
  I6H77_RS08730 (I6H77_08730) - 1825446..1826699 (-) 1254 WP_000144639.1 type II toxin-antitoxin system RelE family toxin -
  I6H77_RS08735 (I6H77_08735) - 1826699..1827121 (-) 423 WP_001065607.1 hypothetical protein -
  I6H77_RS09380 - 1827163..1827372 (-) 210 WP_232007600.1 hypothetical protein -
  I6H77_RS08745 (I6H77_08745) - 1827499..1827942 (-) 444 WP_198456490.1 hypothetical protein -
  I6H77_RS08750 (I6H77_08750) - 1827943..1828167 (-) 225 WP_001046261.1 hypothetical protein -
  I6H77_RS08755 (I6H77_08755) - 1828167..1828601 (-) 435 WP_001065611.1 hypothetical protein -
  I6H77_RS08760 (I6H77_08760) - 1828643..1829008 (-) 366 WP_000231744.1 hypothetical protein -
  I6H77_RS08765 (I6H77_08765) - 1829008..1829451 (-) 444 WP_000606019.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41184.31 Da        Isoelectric Point: 9.6031

>NTDB_id=453039 I6H77_RS08715 WP_000817856.1 1823591..1824661(-) (xerS) [Streptococcus oralis strain FDAARGOS_1020]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKMSDIPLSVLENMSKKDME
AFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDLGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=453039 I6H77_RS08715 WP_000817856.1 1823591..1824661(-) (xerS) [Streptococcus oralis strain FDAARGOS_1020]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTACCAATC
CAAGCTTGCTGTGCCCTACAGTTTTACAACCTTGTACGAATATCTCAAGGAATACGATCGATTTTTCAGCTGGGTTTTAG
AGTCTGGAATTTCAAATGCTGATAAAATGTCTGATATTCCTTTATCTGTCTTGGAAAATATGTCTAAGAAAGATATGGAA
GCTTTTATCCTATATCTACGTGAACGTCCATTGCTGAATGCTAATACAACCAAGCAAGGTGTATCTCAGACGACCATCAA
TCGGACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACAGAGGAGGTTGAAAACGACCTGGGAGAACCCTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACCAAGAAAAAGAAAGAAACACTTGCTGCTAGAGCTGAAAACATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAGGAGTACCCACAACAGCTCTCAAATCGCGCTCT
CTCATCATTTAATAAGAACAAAGAACGTGATTTAGCCATTATTGCCCTTCTCTTGGCGTCTGGTGTCCGCTTATCTGAAG
CTGTTAATTTGGATCTAAGGGACCTTAATCTCAAAATGATGGTGATCGATGTCACTCGAAAAGGGGGGAAACGTGATTCT
GTCAATGTCGCTGCTTTTGCTAAGCCTTACCTAGAGAATTATCTAGCCATTCGAAATCAACGCTATAAGACGGAAAAGAC
AGATACAGCTCTCTTTTTGACCTTATATCGAGGCGTTCCCAATCGTATTGATGCTTCTAGTGTTGAAAAGATGGTTGCTA
AGTACTCTGAGGACTTCAAAGTCCGTGTAACTCCACACAAACTACGCCATACCCTGGCGACTAGGCTCTATGATGCTACT
AAATCGCAAGTTTTGGTCAGCCATCAGCTAGGACATGCCAGTACACAAGTCACTGACCTCTATACCCATATCGTCAATGA
TGAACAAAAGAATGCTTTAGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(68-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1HU81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.596

100

0.986