Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   I6H77_RS05605 Genome accession   NZ_CP066021
Coordinates   1165475..1166188 (-) Length   237 a.a.
NCBI ID   WP_000760677.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1160475..1171188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS05605 (I6H77_05605) treR 1165475..1166188 (-) 714 WP_000760677.1 trehalose operon repressor Regulator
  I6H77_RS05610 (I6H77_05610) treP 1166373..1168340 (+) 1968 WP_000514346.1 PTS system trehalose-specific EIIBC component -
  I6H77_RS05615 (I6H77_05615) treC 1168404..1170029 (+) 1626 WP_001162367.1 alpha,alpha-phosphotrehalase -
  I6H77_RS05620 (I6H77_05620) - 1170175..1170420 (+) 246 WP_000364994.1 YneF family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27736.86 Da        Isoelectric Point: 8.2868

>NTDB_id=453013 I6H77_RS05605 WP_000760677.1 1165475..1166188(-) (treR) [Streptococcus oralis strain FDAARGOS_1020]
MKKYQQLFKQIQKTIQNETYAVGDFLPSEHDLMNQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVQELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELVPNLTRQIAEQSIY
SYIEDNLKLLIDYAQKEITIDHTSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFHFVDFAKRHPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=453013 I6H77_RS05605 WP_000760677.1 1165475..1166188(-) (treR) [Streptococcus oralis strain FDAARGOS_1020]
ATGAAGAAATACCAACAACTATTTAAGCAAATCCAAAAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTCCC
CAGTGAGCACGACCTCATGAATCAGTATCAGGTGAGCCGTGACACCGTCCGAAAAGCTCTGTCCCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGGGGGCAAGGTTCCCAAGTCGTCAAAGAAGAAACGGTCAATTTCCCTGTCTCCAACCTAACC
AGCTACCAAGAACTGGTCCAGGAACTTGGACTTCGCTCTAAGACTAATGTCGTCAGCCTGGACAAGATCATTATCGATAA
AAAATCCTCACTGATAACCGGCTTTCCAGAGTTTCGGATGGTTTGGAAGGTAGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCGGTTCTGGATACGGACTATCTGGATATGGAACTGGTCCCAAATCTCACTCGCCAAATCGCTGAGCAGTCTATCTAC
TCGTATATAGAGGACAACCTCAAACTCCTTATTGATTATGCTCAGAAAGAAATCACCATTGACCACACTAGCGATCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCCATCAAGTCAAAAGTCTATCTCCAAGACGGGCGCCAGT
TTCAATTCACCGAAAGTCGCCATAAATTAGAAAAATTTCACTTTGTTGACTTTGCCAAAAGACATCCGAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

57.872

99.156

0.574