Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   I6H77_RS04900 Genome accession   NZ_CP066021
Coordinates   1005384..1008215 (+) Length   943 a.a.
NCBI ID   WP_001152912.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1000384..1013215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS04870 (I6H77_04870) - 1000813..1001487 (+) 675 WP_000987418.1 CPBP family intramembrane glutamic endopeptidase -
  I6H77_RS04875 (I6H77_04875) - 1001559..1001822 (-) 264 WP_000166112.1 SemiSWEET family transporter -
  I6H77_RS04880 (I6H77_04880) - 1001896..1002930 (-) 1035 WP_025169048.1 S66 family peptidase -
  I6H77_RS04885 (I6H77_04885) - 1003251..1003598 (-) 348 WP_000331830.1 TfoX/Sxy family protein -
  I6H77_RS04890 (I6H77_04890) - 1003614..1004291 (-) 678 WP_000078003.1 DUF1129 domain-containing protein -
  I6H77_RS04895 (I6H77_04895) - 1004303..1005247 (-) 945 WP_000815617.1 magnesium transporter CorA family protein -
  I6H77_RS04900 (I6H77_04900) uvrA 1005384..1008215 (+) 2832 WP_001152912.1 excinuclease ABC subunit UvrA Machinery gene
  I6H77_RS04905 (I6H77_04905) - 1008208..1009269 (+) 1062 WP_001042872.1 M24 family metallopeptidase -
  I6H77_RS04910 (I6H77_04910) mgtA 1009672..1012332 (+) 2661 WP_000858849.1 magnesium-translocating P-type ATPase -
  I6H77_RS04915 (I6H77_04915) spx 1012467..1012865 (+) 399 WP_000591165.1 transcriptional regulator Spx -

Sequence


Protein


Download         Length: 943 a.a.        Molecular weight: 104056.01 Da        Isoelectric Point: 6.1821

>NTDB_id=453004 I6H77_RS04900 WP_001152912.1 1005384..1008215(+) (uvrA) [Streptococcus oralis strain FDAARGOS_1020]
MQDKIVIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMEKPDVDAIDGL
SPAISIDQKTTSKNPRSTVGTTTEINDYLRLLYARVGTPYCINGHGTIKASSVEQIVDKVLELPERQRLQILAPVIRKKK
GQHKSIIEKVQKDGYVRVRVDGEVYDVTEVPELSKSKQHNIDVVVDRIVIKEGIRSRLFDSIEAALRIAEGYVIIDTMDD
SELLFSEHYACPVCGFTVPELEPRLFSFNAPFGSCSECDGLGIKLEVDTDLVVPDASKTLREGALAPWNPISSNYYPNML
EQAMTAFGVDMDIPFEDLSEADKDLILYGSDGKEFHFHYENEFGGVRDIDIPFEGVVTNIKRRYHETNSDYTRTQMRLYM
NELTCGTCHGYRLNDQALSVRVGGEQGPHIGEISDLSIADHLELVSQLTLSENEAIIARPILKEIKDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADYLI
DVGPGAGVFGGEIVAAGTPKQVARNSKSITGQYLSGKRAIPVPEERRAGNGRFIEVTGAHENNLQNITARFPLGKFIAVT
GVSGSGKSTLINSILKKAIAQKLNRNSDKPGKFKTITGIEHVDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVACEVCHGTRYNSETLEVHYKEKNISQVLDMTVNDAVEFF
QHIPKIQRKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSFYILDEPTTGLHTEDIARLLKVLARFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGVGGGTIIATGTPEEVAANEASYTGHYLKGKLHHE

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=453004 I6H77_RS04900 WP_001152912.1 1005384..1008215(+) (uvrA) [Streptococcus oralis strain FDAARGOS_1020]
ATGCAAGATAAAATTGTGATTCATGGGGCGCGTGCCCATAACTTAAAAAATATAGATGTGGAGATTCCAAGAGACAAGCT
GGTTGTTGTGACTGGTTTGTCAGGTTCTGGGAAATCCAGTCTGGCCTTTGATACCCTCTATGCTGAGGGCCAACGTCGCT
ATGTAGAGAGCTTGTCAGCTTACGCTCGTCAGTTCTTGGGCAACATGGAAAAACCAGATGTAGATGCCATTGATGGCCTC
AGTCCAGCTATTTCCATCGACCAGAAAACCACCAGCAAAAACCCTCGTTCGACCGTGGGAACCACGACTGAAATCAATGA
TTATCTGCGTCTCCTCTACGCACGTGTGGGGACGCCTTACTGTATCAACGGGCATGGGACTATCAAGGCTTCTTCTGTAG
AACAAATCGTGGATAAGGTTTTGGAATTGCCAGAACGCCAACGTCTGCAAATTTTAGCTCCGGTCATTCGTAAGAAAAAA
GGGCAACATAAGAGTATCATTGAAAAGGTTCAGAAAGACGGCTATGTCCGCGTCCGAGTGGATGGGGAAGTTTATGATGT
GACCGAAGTTCCAGAGCTGTCTAAGAGCAAGCAACACAATATTGATGTCGTAGTTGACCGTATTGTTATCAAGGAGGGTA
TCCGTAGCCGTCTCTTTGACTCAATCGAGGCTGCCCTTCGTATCGCAGAAGGCTATGTGATTATCGATACTATGGACGAT
TCTGAGTTGCTCTTCTCTGAGCACTATGCCTGTCCAGTTTGTGGTTTTACCGTACCAGAGTTAGAGCCTCGTCTCTTCTC
CTTCAATGCGCCGTTTGGTTCTTGTAGTGAGTGTGATGGTTTGGGTATTAAGCTGGAGGTGGATACTGATTTGGTAGTGC
CAGATGCCAGTAAAACCTTACGTGAGGGGGCGCTAGCACCTTGGAATCCTATCTCATCAAACTACTATCCAAATATGTTA
GAGCAGGCTATGACAGCTTTTGGTGTGGATATGGATATCCCCTTTGAGGACCTGTCAGAAGCGGATAAGGACTTGATTCT
CTATGGTTCGGATGGAAAGGAATTCCATTTCCACTATGAAAATGAATTTGGTGGTGTGCGGGATATTGACATTCCTTTTG
AAGGAGTTGTCACTAATATCAAACGTCGCTACCACGAAACCAATAGTGACTATACTCGCACCCAGATGCGTCTCTACATG
AATGAGCTGACCTGCGGAACTTGTCACGGCTATCGTCTCAACGATCAGGCCTTGTCTGTTCGTGTGGGTGGTGAGCAAGG
GCCACATATCGGTGAAATCTCAGATTTGTCTATCGCAGACCATTTGGAGTTGGTGAGCCAGTTGACCTTGTCTGAAAATG
AAGCCATTATTGCTCGTCCCATTCTCAAGGAAATCAAGGATCGCTTGACCTTCCTCAATAACGTGGGGCTTAACTATTTG
ACGCTGTCACGTTCGGCAGGAACCCTATCAGGTGGGGAGAGTCAGCGAATTCGCTTGGCGACTCAGATTGGGTCCAACCT
CTCAGGTGTCCTCTATATATTGGATGAGCCGTCGATTGGTCTCCACCAGAGGGATAATGACCGCCTGATTGCCAGCTTGA
AAAAAATGCGTGATTTAGGAAATACCTTGATCGTAGTGGAACATGATGAAGATACCATGCGTGAGGCGGATTATCTGATT
GACGTTGGTCCCGGTGCCGGTGTTTTTGGTGGAGAAATCGTCGCTGCAGGGACGCCAAAGCAGGTGGCTCGTAACAGCAA
ATCTATCACAGGCCAGTACTTGTCAGGTAAACGTGCCATTCCAGTACCAGAAGAGCGCCGTGCCGGAAATGGCCGCTTTA
TCGAAGTGACAGGAGCGCATGAGAATAACTTGCAAAATATTACCGCTCGCTTCCCATTGGGAAAATTCATCGCAGTGACA
GGTGTATCAGGTTCAGGGAAATCGACCTTAATCAACAGCATCCTCAAAAAAGCCATTGCCCAGAAGCTTAACCGCAATTC
AGACAAACCTGGTAAGTTTAAGACGATTACAGGGATTGAGCATGTAGACCGCTTGATTGACATTGACCAGAGCCCTATCG
GACGAACGCCAAGGTCTAACCCGGCTACCTATACGGGAGTTTTTGACGATATACGAGACCTCTTTGCTCAGACAAATGAA
GCTAAGATTCGAGGCTACAAGAAGGGCCGTTTCAGTTTTAACGTCAAGGGCGGTCGTTGCGAAGCCTGCTCAGGTGACGG
GATCATCAAGATTGAGATGCACTTCTTGCCAGATGTTTATGTTGCCTGTGAAGTTTGCCATGGGACTCGCTACAACAGTG
AAACCCTAGAAGTCCACTATAAGGAAAAGAATATCTCGCAGGTTTTGGACATGACCGTCAACGATGCGGTGGAATTCTTC
CAACACATTCCCAAGATTCAGCGTAAACTTCAGACCATCAAGGATGTAGGGTTGGGCTATGTAACGTTAGGACAACCAGC
TACCACCCTTTCAGGTGGAGAAGCCCAGCGTATGAAGTTAGCTAGTGAGCTCCACAAACGCTCGACAGGAAAATCCTTCT
ACATTCTGGATGAGCCGACGACAGGGCTTCATACCGAGGATATCGCTCGCTTGCTCAAGGTTTTAGCTCGCTTTGTCGAC
GATGGCAATACTGTTCTCGTCATTGAGCACAATCTGGATGTCATCAAGACGGCAGACCATATCATCGATTTGGGACCTGA
GGGCGGTGTCGGTGGCGGAACCATCATCGCAACAGGAACTCCAGAAGAAGTAGCAGCCAATGAAGCCAGCTACACAGGAC
ACTATTTGAAAGGAAAGTTACATCATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

97.879

100

0.979

  uvrA Streptococcus pneumoniae TIGR4

97.879

100

0.979

  uvrA Streptococcus pneumoniae D39

97.879

100

0.979