Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I6H77_RS04025 Genome accession   NZ_CP066021
Coordinates   821164..821934 (-) Length   256 a.a.
NCBI ID   WP_000616141.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 816164..826934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS03995 (I6H77_03995) comA 816333..818486 (-) 2154 WP_000672141.1 peptide cleavage/export ABC transporter ComA Regulator
  I6H77_RS04000 (I6H77_04000) - 818921..819109 (-) 189 WP_000722235.1 hypothetical protein -
  I6H77_RS04005 (I6H77_04005) - 819119..819286 (-) 168 WP_000415691.1 bacteriocin -
  I6H77_RS04010 (I6H77_04010) - 819304..819492 (-) 189 WP_000180830.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  I6H77_RS04015 (I6H77_04015) - 819933..820169 (-) 237 WP_000136451.1 acyl carrier protein -
  I6H77_RS04020 (I6H77_04020) plsX 820175..821167 (-) 993 WP_000717449.1 phosphate acyltransferase PlsX -
  I6H77_RS04025 (I6H77_04025) recO 821164..821934 (-) 771 WP_000616141.1 DNA repair protein RecO Machinery gene
  I6H77_RS04030 (I6H77_04030) - 821931..823100 (-) 1170 WP_000366327.1 pyridoxal phosphate-dependent aminotransferase -
  I6H77_RS04035 (I6H77_04035) - 823252..824262 (+) 1011 WP_000009125.1 YeiH family protein -
  I6H77_RS04040 (I6H77_04040) - 824291..824728 (-) 438 WP_000076475.1 CoA-binding protein -
  I6H77_RS04045 (I6H77_04045) - 824848..825816 (-) 969 WP_000010177.1 ribose-phosphate diphosphokinase -
  I6H77_RS04050 (I6H77_04050) - 826030..826524 (-) 495 WP_002875379.1 beta-class carbonic anhydrase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29779.24 Da        Isoelectric Point: 5.1762

>NTDB_id=452987 I6H77_RS04025 WP_000616141.1 821164..821934(-) (recO) [Streptococcus oralis strain FDAARGOS_1020]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLRKTLELMEAGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPDHYHEDEKRCHLNPNIPYLLNQFQAIDFETLETISLKAEIKKELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=452987 I6H77_RS04025 WP_000616141.1 821164..821934(-) (recO) [Streptococcus oralis strain FDAARGOS_1020]
ATGATCCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAACTTTCGTGAGGATGACAAGCTGGTCAAAATTTT
TACCGAGCAGGCGGGCAAGCGCATGTTTTTCGTCAAACACGCTGGTCAATCCAAACTAGCTCCTGTTATTCAGCCCTTGG
TGTTGGCACGGTTTCTCTTACGAATCAATGATGACGGCCTTAGCTACATCGAGGACTACCATGAGGTGATGACCTTTCCC
AAGATTAATAGTGATCTTTTTGTCATGGCCTATGCTACCTATGTGGCTGCCCTTGCAGATGCTAGTTTGCAGGATAATCA
GCAGGATGCTCCCTTGTTTGCTTTCTTGAGAAAGACTCTGGAGTTGATGGAAGCAGGCATAGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTTTGCCATCGGGTCGGT
CAGGCCTTTGACTTTTCTTTCAAATATGGAGCCTGCCTATGTCCAGACCATTACCATGAGGACGAGAAACGTTGTCATCT
AAATCCCAACATCCCTTATCTGCTCAATCAATTTCAAGCCATTGATTTTGAAACCTTGGAGACTATTTCGCTTAAGGCCG
AAATCAAGAAAGAGCTACGCCAATTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAGACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

96.094

100

0.961