Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6H77_RS02685 Genome accession   NZ_CP066021
Coordinates   548823..549419 (+) Length   198 a.a.
NCBI ID   WP_000248759.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 543823..554419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS02660 (I6H77_02660) mapZ 544729..546174 (-) 1446 WP_000039241.1 cell division site-positioning protein MapZ -
  I6H77_RS02665 (I6H77_02665) - 546187..547344 (-) 1158 WP_000662905.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  I6H77_RS02675 (I6H77_02675) gpsB 547830..548159 (-) 330 WP_000146523.1 cell division regulator GpsB -
  I6H77_RS02680 (I6H77_02680) - 548229..548756 (-) 528 WP_000199583.1 DUF1273 domain-containing protein -
  I6H77_RS02685 (I6H77_02685) recU 548823..549419 (+) 597 WP_000248759.1 Holliday junction resolvase RecU Machinery gene
  I6H77_RS02690 (I6H77_02690) pbp1a 549416..551584 (+) 2169 WP_001041841.1 penicillin-binding protein PBP1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23061.43 Da        Isoelectric Point: 9.8088

>NTDB_id=452960 I6H77_RS02685 WP_000248759.1 548823..549419(+) (recU) [Streptococcus oralis strain FDAARGOS_1020]
MVNYPHKISSQKRQAPLSQTKNFANRGMSFEKMINATNDYYLSHGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYDGYYIDFEAKETRQKHAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAIDLIRFYHQDKGQK
SMPLGYIRENGYRIEPGAFPQIPYLDIIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=452960 I6H77_RS02685 WP_000248759.1 548823..549419(+) (recU) [Streptococcus oralis strain FDAARGOS_1020]
ATGGTCAACTATCCACATAAAATTTCATCTCAAAAAAGACAAGCACCCCTGTCACAAACTAAAAATTTCGCAAATCGGGG
AATGTCTTTTGAAAAGATGATCAATGCTACGAACGACTACTATTTGTCGCATGGGTTAGCTGTTATTCACAAGAAACCGA
CTCCCATCCAAATCGTACGTGTCGACTATCCCCAACGAAGTCGAGCCAAGATTGTTGAAGCCTACTTCAGACAAGCCTCA
ACTACTGACTATTCAGGGGTTTATGATGGATACTACATCGACTTTGAAGCAAAGGAAACCAGGCAAAAACATGCGATACC
GATGAAGAATTTTCATCCCCATCAGATCCAGCATATGGAACAAGTCCTTGCCCAGCAAGGAATCTGCTTTGTACTCCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTACCGGCTATTGACCTCATCCGTTTCTATCATCAAGATAAGGGACAGAAG
TCAATGCCACTTGGATATATTCGAGAAAATGGATATAGGATTGAGCCTGGTGCCTTTCCTCAAATTCCCTACCTCGACAT
TATCAAAGAACATTTACTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49