Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BAXH7_RS00220 Genome accession   NC_017191
Coordinates   41149..41439 (-) Length   96 a.a.
NCBI ID   WP_186434521.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens XH7     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 36149..46439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAXH7_RS00180 (BAXH7_00033) darA 36166..36495 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  BAXH7_RS00185 (BAXH7_00034) - 36508..36948 (+) 441 WP_013350745.1 YaaR family protein -
  BAXH7_RS00190 (BAXH7_00035) holB 36960..37949 (+) 990 WP_013350746.1 DNA polymerase III subunit delta' -
  BAXH7_RS00195 (BAXH7_00036) ricT 37952..38779 (+) 828 WP_013350747.1 competence/sporulation regulator complex protein RicT -
  BAXH7_RS00200 (BAXH7_00037) yabA 38794..39153 (+) 360 WP_013350748.1 replication initiation-control protein YabA -
  BAXH7_RS00205 (BAXH7_00038) - 39214..39957 (+) 744 WP_014469594.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BAXH7_RS00210 (BAXH7_00039) - 39944..40243 (+) 300 WP_013350750.1 GIY-YIG nuclease family protein -
  BAXH7_RS00215 (BAXH7_00040) rsmI 40218..41099 (+) 882 WP_013350751.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BAXH7_RS00220 (BAXH7_00041) abrB 41149..41439 (-) 291 WP_186434521.1 transition state genes transcriptional regulator AbrB Regulator
  BAXH7_RS00225 (BAXH7_00042) metG 41922..43913 (+) 1992 WP_014469597.1 methionine--tRNA ligase -
  BAXH7_RS00230 (BAXH7_00043) - 43990..44757 (+) 768 WP_014469598.1 TatD family hydrolase -
  BAXH7_RS00235 (BAXH7_00045) - 44892..46211 (+) 1320 WP_014471348.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10727.49 Da        Isoelectric Point: 6.3482

>NTDB_id=45292 BAXH7_RS00220 WP_186434521.1 41149..41439(-) (abrB) [Bacillus amyloliquefaciens XH7]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKISLKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=45292 BAXH7_RS00220 WP_186434521.1 41149..41439(-) (abrB) [Bacillus amyloliquefaciens XH7]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCAGCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969

Multiple sequence alignment