Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   HUE88_RS10960 Genome accession   NZ_CP054492
Coordinates   2175313..2177115 (+) Length   600 a.a.
NCBI ID   WP_194368976.1    Uniprot ID   -
Organism   Candidatus Sulfurimonas baltica strain GD2     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2170313..2182115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUE88_RS10940 (HUE88_10945) nhaD 2171938..2173269 (-) 1332 WP_194368970.1 sodium:proton antiporter NhaD -
  HUE88_RS10945 (HUE88_10950) nadB 2173266..2174714 (-) 1449 WP_194368972.1 L-aspartate oxidase -
  HUE88_RS10950 (HUE88_10955) - 2174715..2174906 (-) 192 WP_194372719.1 hypothetical protein -
  HUE88_RS10955 (HUE88_10960) - 2174964..2175335 (+) 372 WP_229860072.1 hypothetical protein -
  HUE88_RS10960 (HUE88_10965) uvrC 2175313..2177115 (+) 1803 WP_194368976.1 excinuclease ABC subunit UvrC Machinery gene
  HUE88_RS10965 (HUE88_10970) - 2177185..2177595 (+) 411 WP_194368978.1 PAS domain-containing protein -
  HUE88_RS10970 (HUE88_10975) - 2177607..2179283 (+) 1677 WP_194368980.1 Hpt domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69384.40 Da        Isoelectric Point: 9.3709

>NTDB_id=452894 HUE88_RS10960 WP_194368976.1 2175313..2177115(+) (uvrC) [Candidatus Sulfurimonas baltica strain GD2]
MNLKETIKQLPDSAGVYQYFDINGHLLYIGKAKSLSKRVRSYFSFTPTLKAKQNLSLRITKMIDQTASLNYIVVNSEHDA
LILENSLIKQLNPKYNILLRDDKTYPYIYVDNSLDFPRFEITRKVIQSSSIKYYGPYSVGAKDILDSVYEICKLVQKKNC
LKSKKLCLYYQIDKCLGPCELDISPAVYKKELDLATELILNKKTLIKKLQERMSFYAEELRFEEAGELRDRIETIGRSEI
KSEIDFASDENYDIFVLQNTTNRAVILRIFMRNGKIISSSHDYIQLNEGYDEDEIYQRVLMEFYKDEKPPIIAPILVAHK
FLHVEIIEEHLSKIFGQKAEIKVPLRGDKKHLIELAILNAKELLKKEISESNSKILSEIKELFSLQRVPNRVEIFDNSHM
SGVATVGAMAVYENGKFDKKGYRTYHLQAKDEYSQMRETLTRRVERFFKNSPPDLWVLDGGATLLKLATEILESNGIFLD
VIAISKEKIDAKAHRAKGKANDILHTKDDIFRLKNSDKRLQWVQNLRDEAHRCAIGFHKKTKLKLDKESKLLTLKGISQA
KIVKLLNHFGTFELLKELTIDEISSVLNKKDAEIIKNIYN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=452894 HUE88_RS10960 WP_194368976.1 2175313..2177115(+) (uvrC) [Candidatus Sulfurimonas baltica strain GD2]
ATGAATCTCAAAGAGACAATTAAACAACTGCCGGATTCTGCCGGTGTTTACCAATATTTTGACATAAATGGACATTTGCT
TTACATTGGAAAAGCAAAGAGTCTCTCAAAGAGAGTAAGAAGTTATTTTAGTTTTACCCCTACTCTAAAAGCTAAGCAAA
ACCTATCTCTTAGAATCACAAAAATGATAGACCAGACAGCTTCTTTAAACTATATAGTTGTTAACAGTGAGCATGATGCA
CTTATTTTAGAAAACTCACTTATAAAACAGCTAAATCCAAAATACAACATCTTACTTCGTGATGACAAGACTTACCCATA
TATATATGTGGACAATTCACTGGATTTTCCAAGATTTGAGATAACAAGAAAAGTGATTCAATCATCAAGTATCAAGTATT
ATGGGCCATACTCTGTCGGTGCCAAAGATATTTTAGACTCTGTGTATGAAATTTGTAAACTTGTACAGAAAAAAAATTGT
CTAAAATCAAAAAAATTATGCCTCTATTATCAGATAGATAAATGTCTTGGACCATGTGAGCTTGATATTTCACCAGCAGT
ATATAAAAAAGAGCTCGATTTGGCGACAGAGTTGATTTTAAACAAAAAAACTCTTATAAAAAAACTTCAAGAGAGAATGT
CTTTTTATGCTGAGGAACTTCGTTTTGAGGAGGCAGGAGAGCTAAGAGACCGCATAGAAACAATAGGTCGTTCCGAGATT
AAAAGTGAGATTGACTTTGCAAGTGATGAAAATTACGATATTTTTGTCCTTCAAAACACAACAAACAGAGCCGTTATTCT
TAGAATATTTATGAGAAACGGTAAAATTATCTCATCATCACATGACTACATACAACTTAACGAAGGTTATGATGAGGATG
AAATCTACCAAAGAGTATTAATGGAGTTCTACAAAGATGAAAAGCCACCAATAATAGCTCCTATCTTAGTGGCACATAAG
TTTCTACATGTAGAAATAATTGAGGAGCATTTAAGTAAAATCTTTGGACAAAAAGCAGAAATTAAAGTACCGCTCAGAGG
TGACAAAAAGCACTTGATAGAGTTAGCTATTTTAAATGCGAAAGAGTTGCTAAAAAAAGAGATTAGTGAGAGCAACTCTA
AAATATTGTCTGAGATTAAAGAGCTTTTTTCTTTGCAAAGAGTTCCAAACCGTGTAGAAATTTTTGACAACTCTCACATG
TCAGGGGTTGCAACAGTGGGTGCCATGGCAGTTTATGAAAATGGCAAGTTTGATAAAAAAGGGTATAGAACATATCACCT
TCAAGCAAAAGATGAATACTCCCAAATGAGAGAGACACTCACCAGAAGAGTGGAGAGATTCTTTAAAAATTCACCTCCTG
ATTTGTGGGTTTTAGATGGTGGAGCTACTCTGCTGAAATTAGCTACTGAAATTCTGGAATCAAATGGGATATTTTTAGAT
GTTATTGCAATTTCAAAAGAGAAAATAGATGCCAAAGCCCATAGAGCAAAGGGGAAAGCAAATGATATATTACATACAAA
AGATGATATTTTCAGACTAAAAAATAGCGACAAAAGACTCCAGTGGGTTCAAAATTTAAGAGATGAGGCCCATAGATGCG
CAATAGGTTTTCATAAAAAAACAAAGTTAAAACTTGACAAAGAGAGTAAACTTTTAACTTTAAAAGGGATATCACAAGCA
AAAATAGTAAAATTGCTTAATCATTTTGGGACATTTGAGTTATTAAAAGAATTAACCATTGATGAGATTAGTTCTGTATT
AAACAAAAAAGATGCAGAAATCATTAAAAATATTTATAACTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-535)

UvrB/uvrC motif (UVR)

(203-235)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.252

99.167

0.498