Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   LL3_RS21545 Genome accession   NC_017190
Coordinates   328808..328972 (+) Length   54 a.a.
NCBI ID   WP_269387144.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LL3     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 323808..333972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL3_RS21540 srfAB 325753..328743 (+) 2991 Protein_308 surfactin non-ribosomal peptide synthetase SrfAB -
  LL3_RS21545 comS 328808..328972 (+) 165 WP_269387144.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6236.25 Da        Isoelectric Point: 12.3302

>NTDB_id=45289 LL3_RS21545 WP_269387144.1 328808..328972(+) (comS) [Bacillus amyloliquefaciens LL3]
MRARRSSSLNRSDKRLIRSIILFPQHNAGCISSISLGRPARATTSLLYFCWRDR

Nucleotide


Download         Length: 165 bp        

>NTDB_id=45289 LL3_RS21545 WP_269387144.1 328808..328972(+) (comS) [Bacillus amyloliquefaciens LL3]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAA
CGCAGGATGTATATCCTCAATCAGCTTGGGCAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAGGGATC
GGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

60.87

85.185

0.519

Multiple sequence alignment