Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPAKL117_RS02305 Genome accession   NC_019560
Coordinates   478765..479049 (-) Length   94 a.a.
NCBI ID   WP_015085630.1    Uniprot ID   -
Organism   Helicobacter pylori Aklavik117     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473765..484049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL117_RS02280 (HPAKL117_02285) - 474409..475539 (-) 1131 WP_015085628.1 VirB8/TrbF family protein -
  HPAKL117_RS08400 - 475532..475666 (-) 135 WP_041200005.1 hypothetical protein -
  HPAKL117_RS02290 (HPAKL117_02290) comB4 475668..478244 (-) 2577 WP_015085629.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPAKL117_RS02295 (HPAKL117_02295) - 478244..478480 (-) 237 WP_001183708.1 hypothetical protein -
  HPAKL117_RS02300 (HPAKL117_02300) comB3 478491..478754 (-) 264 WP_001177715.1 hypothetical protein Machinery gene
  HPAKL117_RS02305 (HPAKL117_02305) comB2 478765..479049 (-) 285 WP_015085630.1 TrbC/VirB2 family protein Machinery gene
  HPAKL117_RS02310 (HPAKL117_02310) - 479046..479525 (-) 480 WP_015085631.1 hypothetical protein -
  HPAKL117_RS02315 (HPAKL117_02315) - 479629..480417 (-) 789 WP_015085632.1 hypothetical protein -
  HPAKL117_RS08405 (HPAKL117_02320) - 480465..481121 (-) 657 WP_015085633.1 DEAD/DEAH box helicase family protein -
  HPAKL117_RS08565 - 481177..481311 (+) 135 WP_017283918.1 hypothetical protein -
  HPAKL117_RS08410 (HPAKL117_02325) - 481295..481971 (-) 677 Protein_452 type I restriction endonuclease -
  HPAKL117_RS02325 (HPAKL117_02330) - 482019..483914 (-) 1896 WP_015085635.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10738.04 Da        Isoelectric Point: 11.0668

>NTDB_id=45289 HPAKL117_RS02305 WP_015085630.1 478765..479049(-) (comB2) [Helicobacter pylori Aklavik117]
MKKLRHFRNLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=45289 HPAKL117_RS02305 WP_015085630.1 478765..479049(-) (comB2) [Helicobacter pylori Aklavik117]
ATGAAAAAATTAAGGCATTTTAGAAATCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTCATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(6-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

56.667

95.745

0.543

Multiple sequence alignment